4q7c

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (17:29, 20 September 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Structure of AF2299, a CDP-alcohol phosphotransferase==
==Structure of AF2299, a CDP-alcohol phosphotransferase==
-
<StructureSection load='4q7c' size='340' side='right' caption='[[4q7c]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
+
<StructureSection load='4q7c' size='340' side='right'caption='[[4q7c]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4q7c]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Q7C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4Q7C FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4q7c]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Archaeoglobus_fulgidus_DSM_4304 Archaeoglobus fulgidus DSM 4304]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Q7C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4Q7C FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=C2G:[CYTIDINE-5-PHOSPHATE]+GLYCERYLPHOSPHORIC+ACID+ESTER'>C2G</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MPG:1-MONOOLEOYL-RAC-GLYCEROL'>MPG</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene><br>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.102&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4o6m|4o6m]], [[4o6n|4o6n]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=C2G:[CYTIDINE-5-PHOSPHATE]+GLYCERYLPHOSPHORIC+ACID+ESTER'>C2G</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MPG:[(Z)-OCTADEC-9-ENYL]+(2R)-2,3-BIS(OXIDANYL)PROPANOATE'>MPG</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4q7c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q7c OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4q7c RCSB], [http://www.ebi.ac.uk/pdbsum/4q7c PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4q7c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q7c OCA], [https://pdbe.org/4q7c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4q7c RCSB], [https://www.ebi.ac.uk/pdbsum/4q7c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4q7c ProSAT]</span></td></tr>
-
<table>
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/O27985_ARCFU O27985_ARCFU]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The CDP-alcohol phosphotransferase (CDP-AP) family of integral membrane enzymes catalyses the transfer of a substituted phosphate group from a CDP-linked donor to an alcohol acceptor. This is an essential reaction for phospholipid biosynthesis across all kingdoms of life, and it is catalysed solely by CDP-APs. Here we report the 2.0 A resolution crystal structure of a representative CDP-AP from Archaeoglobus fulgidus. The enzyme (AF2299) is a homodimer, with each protomer consisting of six transmembrane helices and an N-terminal cytosolic domain. A polar cavity within the membrane accommodates the active site, lined with the residues from an absolutely conserved CDP-AP signature motif (D(1)xxD(2)G(1)xxAR...G(2)xxxD(3)xxxD(4)). Structures in the apo, CMP-bound, CDP-bound and CDP-glycerol-bound states define functional roles for each of these eight conserved residues and allow us to propose a sequential, base-catalysed mechanism universal for CDP-APs, in which the fourth aspartate (D4) acts as the catalytic base.
 +
 
 +
Structural basis for catalysis in a CDP-alcohol phosphotransferase.,Sciara G, Clarke OB, Tomasek D, Kloss B, Tabuso S, Byfield R, Cohn R, Banerjee S, Rajashankar KR, Slavkovic V, Graziano JH, Shapiro L, Mancia F Nat Commun. 2014 Jun 13;5:4068. doi: 10.1038/ncomms5068. PMID:24923293<ref>PMID:24923293</ref>
 +
 
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 4q7c" style="background-color:#fffaf0;"></div>
 +
 
 +
==See Also==
 +
*[[Phosphotransferase 3D structures|Phosphotransferase 3D structures]]
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Banerjee, S.]]
+
[[Category: Archaeoglobus fulgidus DSM 4304]]
-
[[Category: Clarke, O B.]]
+
[[Category: Large Structures]]
-
[[Category: Mancia, F.]]
+
[[Category: Banerjee S]]
-
[[Category: NYCOMPS, New York Consortium on Membrane Protein Structure.]]
+
[[Category: Clarke OB]]
-
[[Category: Rajashankar, K R.]]
+
[[Category: Mancia F]]
-
[[Category: Sciara, G.]]
+
[[Category: Rajashankar KR]]
-
[[Category: Shapiro, L.]]
+
[[Category: Sciara G]]
-
[[Category: Tomasek, D.]]
+
[[Category: Shapiro L]]
-
[[Category: Cdp-alcohol phosphotransferase]]
+
[[Category: Tomasek D]]
-
[[Category: Membrane protein]]
+
-
[[Category: New york consortium on membrane protein structure]]
+
-
[[Category: Nycomp]]
+
-
[[Category: Psi-biology]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Transferase]]
+

Current revision

Structure of AF2299, a CDP-alcohol phosphotransferase

PDB ID 4q7c

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools