We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

3ntd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:21, 6 September 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Structure of the Shewanella loihica PV-4 NADH-dependent persulfide reductase C531S Mutant==
==Structure of the Shewanella loihica PV-4 NADH-dependent persulfide reductase C531S Mutant==
-
<StructureSection load='3ntd' size='340' side='right' caption='[[3ntd]], [[Resolution|resolution]] 1.99&Aring;' scene=''>
+
<StructureSection load='3ntd' size='340' side='right'caption='[[3ntd]], [[Resolution|resolution]] 1.99&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3ntd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Shewanella_loihica Shewanella loihica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NTD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3NTD FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3ntd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_loihica_PV-4 Shewanella loihica PV-4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NTD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3NTD FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=COA:COENZYME+A'>COA</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene><br>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.99&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3nta|3nta]], [[3nt6|3nt6]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=COA:COENZYME+A'>COA</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr>
-
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Shew_0729 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=359303 Shewanella loihica])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ntd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ntd OCA], [https://pdbe.org/3ntd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ntd RCSB], [https://www.ebi.ac.uk/pdbsum/3ntd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ntd ProSAT]</span></td></tr>
-
<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/CoA-disulfide_reductase CoA-disulfide reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.1.14 1.8.1.14] </span></td></tr>
+
</table>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ntd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ntd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ntd RCSB], [http://www.ebi.ac.uk/pdbsum/3ntd PDBsum]</span></td></tr>
+
== Function ==
-
<table>
+
[https://www.uniprot.org/uniprot/A3QAV3_SHELP A3QAV3_SHELP]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 15: Line 16:
Characterization of an NADH-dependent persulfide reductase from &lt;i&gt;Shewanella loihica&lt;/i&gt; PV-4: Implications for the mechanism of sulfur respiration via FAD-dependent enzymes.,Warner MD, Lukose V, Lee KH, Lopez K, Sazinsky M, Crane Iii EJ Biochemistry. 2010 Nov 23. PMID:21090815<ref>PMID:21090815</ref>
Characterization of an NADH-dependent persulfide reductase from &lt;i&gt;Shewanella loihica&lt;/i&gt; PV-4: Implications for the mechanism of sulfur respiration via FAD-dependent enzymes.,Warner MD, Lukose V, Lee KH, Lopez K, Sazinsky M, Crane Iii EJ Biochemistry. 2010 Nov 23. PMID:21090815<ref>PMID:21090815</ref>
-
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 3ntd" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: CoA-disulfide reductase]]
+
[[Category: Large Structures]]
-
[[Category: Shewanella loihica]]
+
[[Category: Shewanella loihica PV-4]]
-
[[Category: Crane, E J.]]
+
[[Category: Crane EJ]]
-
[[Category: Lee, K H.]]
+
[[Category: Lee KH]]
-
[[Category: Lukose, V.]]
+
[[Category: Lukose V]]
-
[[Category: Sazinsky, M H.]]
+
[[Category: Sazinsky MH]]
-
[[Category: Warner, M D.]]
+
[[Category: Warner MD]]
-
[[Category: Coa]]
+
-
[[Category: Fad]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Persulfide reductase]]
+
-
[[Category: Rhodanese]]
+

Current revision

Structure of the Shewanella loihica PV-4 NADH-dependent persulfide reductase C531S Mutant

PDB ID 3ntd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3ntd"
Personal tools