3n75

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==X-ray Crystal Structure of the Escherichia coli Inducible Lysine Decarboxylase LdcI==
==X-ray Crystal Structure of the Escherichia coli Inducible Lysine Decarboxylase LdcI==
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<StructureSection load='3n75' size='340' side='right' caption='[[3n75]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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<StructureSection load='3n75' size='340' side='right'caption='[[3n75]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3n75]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N75 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3N75 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3n75]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N75 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3N75 FirstGlance]. <br>
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</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=G4P:GUANOSINE-5,3-TETRAPHOSPHATE'>G4P</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=P6G:HEXAETHYLENE+GLYCOL'>P6G</scene><br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=LLP:2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)'>LLP</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=G4P:GUANOSINE-5,3-TETRAPHOSPHATE'>G4P</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=LLP:(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC+ACID'>LLP</scene>, <scene name='pdbligand=P6G:HEXAETHYLENE+GLYCOL'>P6G</scene></td></tr>
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<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">b4131, cadA, JW4092, ldcI, LdcI/CadA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3n75 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3n75 OCA], [https://pdbe.org/3n75 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3n75 RCSB], [https://www.ebi.ac.uk/pdbsum/3n75 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3n75 ProSAT]</span></td></tr>
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<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysine_decarboxylase Lysine decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.18 4.1.1.18] </span></td></tr>
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</table>
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<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3n75 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3n75 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3n75 RCSB], [http://www.ebi.ac.uk/pdbsum/3n75 PDBsum]</span></td></tr>
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== Function ==
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<table>
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[https://www.uniprot.org/uniprot/LDCI_ECOLI LDCI_ECOLI] Plays a role in pH homeostasis by consuming protons and neutralizing the acidic by-products of carbohydrate fermentation.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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Linkage between the bacterial acid stress and stringent responses: the structure of the inducible lysine decarboxylase.,Kanjee U, Gutsche I, Alexopoulos E, Zhao B, El Bakkouri M, Thibault G, Liu K, Ramachandran S, Snider J, Pai EF, Houry WA EMBO J. 2011 Jan 28. PMID:21278708<ref>PMID:21278708</ref>
Linkage between the bacterial acid stress and stringent responses: the structure of the inducible lysine decarboxylase.,Kanjee U, Gutsche I, Alexopoulos E, Zhao B, El Bakkouri M, Thibault G, Liu K, Ramachandran S, Snider J, Pai EF, Houry WA EMBO J. 2011 Jan 28. PMID:21278708<ref>PMID:21278708</ref>
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
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<div class="pdbe-citations 3n75" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Escherichia coli]]
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[[Category: Escherichia coli K-12]]
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[[Category: Lysine decarboxylase]]
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[[Category: Large Structures]]
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[[Category: Alexopoulos, E.]]
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[[Category: Alexopoulos E]]
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[[Category: Houry, W A.]]
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[[Category: Houry WA]]
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[[Category: Kanjee, U.]]
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[[Category: Kanjee U]]
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[[Category: Pai, E F.]]
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[[Category: Pai EF]]
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[[Category: Acid stress response]]
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[[Category: Lyase]]
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[[Category: Pyridoxal-5'-phosphate dependent decarboxylase]]
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[[Category: Stringent response]]
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Current revision

X-ray Crystal Structure of the Escherichia coli Inducible Lysine Decarboxylase LdcI

PDB ID 3n75

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