4qfw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (17:31, 20 September 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of acyl-CoA thioesterase tesB from Yersinia pestis==
==Crystal structure of acyl-CoA thioesterase tesB from Yersinia pestis==
-
<StructureSection load='4qfw' size='340' side='right' caption='[[4qfw]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+
<StructureSection load='4qfw' size='340' side='right'caption='[[4qfw]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4qfw]] is a 4 chain structure. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4gwh 4gwh]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QFW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4QFW FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4qfw]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4gwh 4gwh]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QFW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4QFW FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4qfw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qfw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4qfw RCSB], [http://www.ebi.ac.uk/pdbsum/4qfw PDBsum]</span></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
<table>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4qfw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qfw OCA], [https://pdbe.org/4qfw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4qfw RCSB], [https://www.ebi.ac.uk/pdbsum/4qfw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4qfw ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A0A3N4BCC7_YERPE A0A3N4BCC7_YERPE]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Yersinia pestis is a highly virulent human pathogen and is the causative agent of bubonic plague. Spread through the bite of infected fleas, plague epidemics have marked important events in history, including the Justinian plague (6th century), the Black Death (14th century) which decimated nearly one quarter of the European population, and more recently the Orientalis plague (1894). To date, deaths are still being reported and, without treatment, the disease kills most people within 4 days. One of the thioesterases from Y. pestis, TesB, is a broad-range acyl-CoA thioesterase and is highly conserved within prokaryotes and throughout evolution, sharing sequence similarity with the HIV Nef binding protein ACOT8. Here the expression, purification, crystallization and diffraction of TesB are reported. TesB has been recombinantly expressed and crystallized using the vapour-diffusion hanging-drop technique at pH 7.0 and 290 K. After optimization, crystals diffracted to 2.0 A resolution at the Australian Synchrotron and belong to the space group P12(1)1 (a = 73.55, b = 170.82, c = 101.98 A), with eight molecules likely to be present in the asymmetric unit.
 +
 
 +
Crystallization of the acyl-CoA thioesterase TesB from Yersinia pestis.,Swarbrick CM, Patterson EI, Forwood JK Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Feb 1;69(Pt 2):188-90., doi: 10.1107/S1744309113001267. Epub 2013 Jan 31. PMID:23385765<ref>PMID:23385765</ref>
 +
 
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 4qfw" style="background-color:#fffaf0;"></div>
 +
 
 +
==See Also==
 +
*[[Thioesterase 3D structures|Thioesterase 3D structures]]
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Forwood, J K.]]
+
[[Category: Large Structures]]
-
[[Category: Swarbrick, C M.D.]]
+
[[Category: Yersinia pestis]]
-
[[Category: 4hbt-like]]
+
[[Category: Forwood JK]]
-
[[Category: Acyl-coa thioesterase]]
+
[[Category: Swarbrick CMD]]
-
[[Category: Double-hotdog]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Thioesterase]]
+

Current revision

Crystal structure of acyl-CoA thioesterase tesB from Yersinia pestis

PDB ID 4qfw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools