This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3t0v
From Proteopedia
(Difference between revisions)
| (3 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| + | |||
==Unliganded fluorogen activating protein M8VL== | ==Unliganded fluorogen activating protein M8VL== | ||
| - | <StructureSection load='3t0v' size='340' side='right' caption='[[3t0v]], [[Resolution|resolution]] 1.45Å' scene=''> | + | <StructureSection load='3t0v' size='340' side='right'caption='[[3t0v]], [[Resolution|resolution]] 1.45Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3t0v]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3t0v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T0V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3T0V FirstGlance]. <br> |
| - | </td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PE3:3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL'>PE3</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene>< | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PE3:3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL'>PE3</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr> |
| - | <tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr> | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr> |
| - | <tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3t0w|3t0w]], [[3t0x|3t0x]]</td></tr> | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3t0w|3t0w]], [[3t0x|3t0x]]</div></td></tr> |
| - | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3t0v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3t0v OCA], [https://pdbe.org/3t0v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3t0v RCSB], [https://www.ebi.ac.uk/pdbsum/3t0v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3t0v ProSAT]</span></td></tr> |
| - | <table> | + | </table> |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
| Line 14: | Line 15: | ||
A Variable Light Domain Fluorogen Activating Protein Homodimerizes To Activate Dimethylindole Red.,Senutovitch N, Stanfield RL, Bhattacharyya S, Rule GS, Wilson IA, Armitage BA, Waggoner AS, Berget PB Biochemistry. 2012 Mar 14. PMID:22390683<ref>PMID:22390683</ref> | A Variable Light Domain Fluorogen Activating Protein Homodimerizes To Activate Dimethylindole Red.,Senutovitch N, Stanfield RL, Bhattacharyya S, Rule GS, Wilson IA, Armitage BA, Waggoner AS, Berget PB Biochemistry. 2012 Mar 14. PMID:22390683<ref>PMID:22390683</ref> | ||
| - | From | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> |
</div> | </div> | ||
| + | <div class="pdbe-citations 3t0v" style="background-color:#fffaf0;"></div> | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Human]] |
| - | [[Category: Armitage, B | + | [[Category: Large Structures]] |
| - | [[Category: Berget, P | + | [[Category: Armitage, B]] |
| - | [[Category: Bhattacharyya, S | + | [[Category: Berget, P]] |
| - | [[Category: Rule, G | + | [[Category: Bhattacharyya, S]] |
| - | [[Category: Senutovitch, N | + | [[Category: Rule, G]] |
| - | [[Category: Stanfield, R | + | [[Category: Senutovitch, N]] |
| - | [[Category: Waggoner, A S | + | [[Category: Stanfield, R]] |
| - | [[Category: Wilson, I A | + | [[Category: Waggoner, A S]] |
| + | [[Category: Wilson, I A]] | ||
[[Category: Dimethylindole red]] | [[Category: Dimethylindole red]] | ||
[[Category: Dye-binding protein]] | [[Category: Dye-binding protein]] | ||
[[Category: Fluorogen activation]] | [[Category: Fluorogen activation]] | ||
[[Category: Immunoglobulin fold]] | [[Category: Immunoglobulin fold]] | ||
Current revision
Unliganded fluorogen activating protein M8VL
| |||||||||||
