This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ue7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:55, 14 March 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
 +
==X-ray crystal structure of a novel topological analogue of crambin==
==X-ray crystal structure of a novel topological analogue of crambin==
-
<StructureSection load='3ue7' size='340' side='right' caption='[[3ue7]], [[Resolution|resolution]] 1.08&Aring;' scene=''>
+
<StructureSection load='3ue7' size='340' side='right'caption='[[3ue7]], [[Resolution|resolution]] 1.08&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3ue7]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UE7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3UE7 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3ue7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Crambe_hispanica_subsp._abyssinica Crambe hispanica subsp. abyssinica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UE7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3UE7 FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=DAR:D-ARGININE'>DAR</scene>, <scene name='pdbligand=DAS:D-ASPARTIC+ACID'>DAS</scene>, <scene name='pdbligand=DCY:D-CYSTEINE'>DCY</scene>, <scene name='pdbligand=DGL:D-GLUTAMIC+ACID'>DGL</scene>, <scene name='pdbligand=DIL:D-ISOLEUCINE'>DIL</scene>, <scene name='pdbligand=DLE:D-LEUCINE'>DLE</scene>, <scene name='pdbligand=DPN:D-PHENYLALANINE'>DPN</scene>, <scene name='pdbligand=DPR:D-PROLINE'>DPR</scene>, <scene name='pdbligand=DSG:D-ASPARAGINE'>DSG</scene>, <scene name='pdbligand=DSN:D-SERINE'>DSN</scene>, <scene name='pdbligand=DTH:D-THREONINE'>DTH</scene>, <scene name='pdbligand=DTY:D-TYROSINE'>DTY</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.08&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ue7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ue7 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ue7 RCSB], [http://www.ebi.ac.uk/pdbsum/3ue7 PDBsum]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=DAR:D-ARGININE'>DAR</scene>, <scene name='pdbligand=DAS:D-ASPARTIC+ACID'>DAS</scene>, <scene name='pdbligand=DCY:D-CYSTEINE'>DCY</scene>, <scene name='pdbligand=DGL:D-GLUTAMIC+ACID'>DGL</scene>, <scene name='pdbligand=DIL:D-ISOLEUCINE'>DIL</scene>, <scene name='pdbligand=DLE:D-LEUCINE'>DLE</scene>, <scene name='pdbligand=DPN:D-PHENYLALANINE'>DPN</scene>, <scene name='pdbligand=DPR:D-PROLINE'>DPR</scene>, <scene name='pdbligand=DSG:D-ASPARAGINE'>DSG</scene>, <scene name='pdbligand=DSN:D-SERINE'>DSN</scene>, <scene name='pdbligand=DTH:D-THREONINE'>DTH</scene>, <scene name='pdbligand=DTY:D-TYROSINE'>DTY</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene></td></tr>
-
<table>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ue7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ue7 OCA], [https://pdbe.org/3ue7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ue7 RCSB], [https://www.ebi.ac.uk/pdbsum/3ue7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ue7 ProSAT]</span></td></tr>
-
<div style="background-color:#fffaf0;">
+
</table>
-
== Publication Abstract from PubMed ==
+
== Function ==
-
Lassoed at the other end: Original synthetic and structure determination methods were used to make a protein molecule with an unprecedented linear-loop polypeptide chain topology, and to characterize its X-ray structure.
+
[https://www.uniprot.org/uniprot/CRAM_CRAAB CRAM_CRAAB] The function of this hydrophobic plant seed protein is not known.
-
 
+
-
Design, total chemical synthesis, and x-ray structure of a protein having a novel linear-loop polypeptide chain topology.,Mandal K, Pentelute BL, Bang D, Gates ZP, Torbeev VY, Kent SB Angew Chem Int Ed Engl. 2012 Feb 6;51(6):1481-6. doi:, 10.1002/anie.201107846. Epub 2011 Dec 30. PMID:22213444<ref>PMID:22213444</ref>
+
-
 
+
-
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
+
-
</div>
+
-
== References ==
+
-
<references/>
+
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bang, D.]]
+
[[Category: Crambe hispanica subsp. abyssinica]]
-
[[Category: Gates, Z P.]]
+
[[Category: Large Structures]]
-
[[Category: Kent, S B.H.]]
+
[[Category: Bang D]]
-
[[Category: Mandal, K.]]
+
[[Category: Gates ZP]]
-
[[Category: Pentelute, B L.]]
+
[[Category: Kent SBH]]
-
[[Category: Torbeev, V Y.]]
+
[[Category: Mandal K]]
-
[[Category: Crambin topological analogue]]
+
[[Category: Pentelute BL]]
-
[[Category: Quasi-racemic crystallization]]
+
[[Category: Torbeev VY]]
-
[[Category: Unknown function]]
+

Current revision

X-ray crystal structure of a novel topological analogue of crambin

PDB ID 3ue7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools