3t4y

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==S25-2- KDO monosaccharide complex==
==S25-2- KDO monosaccharide complex==
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<StructureSection load='3t4y' size='340' side='right' caption='[[3t4y]], [[Resolution|resolution]] 1.73&Aring;' scene=''>
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<StructureSection load='3t4y' size='340' side='right'caption='[[3t4y]], [[Resolution|resolution]] 1.73&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3t4y]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1q9v 1q9v]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T4Y OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3T4Y FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3t4y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1q9v 1q9v]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T4Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3T4Y FirstGlance]. <br>
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</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=KDO:3-DEOXY-D-MANNO-OCT-2-ULOSONIC+ACID'>KDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.73&#8491;</td></tr>
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<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3t4y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3t4y OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3t4y RCSB], [http://www.ebi.ac.uk/pdbsum/3t4y PDBsum]</span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=KDO:3-DEOXY-D-MANNO-OCT-2-ULOSONIC+ACID'>KDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<table>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3t4y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3t4y OCA], [https://pdbe.org/3t4y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3t4y RCSB], [https://www.ebi.ac.uk/pdbsum/3t4y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3t4y ProSAT]</span></td></tr>
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<div style="background-color:#fffaf0;">
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</table>
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== Publication Abstract from PubMed ==
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High-resolution structures reveal how a germline antibody can recognize a range of clinically relevant carbohydrate epitopes. The germline response to a carbohydrate immunogen can be critical to survivability, with selection for antibody gene segments that both confer protection against common pathogens and retain the flexibility to adapt to new disease organisms. We show here that antibody S25-2 binds several distinct inner-core epitopes of bacterial lipopolysaccharides (LPSs) by linking an inherited monosaccharide residue binding site with a subset of complementarity-determining regions (CDRs) of limited flexibility positioned to recognize the remainder of an array of different epitopes. This strategy allows germline antibodies to adapt to different epitopes while minimizing entropic penalties associated with the immobilization of labile CDRs upon binding of antigen, and provides insight into the link between the genetic origin of individual CDRs and their respective roles in antigen recognition.
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Germline antibody recognition of distinct carbohydrate epitopes.,Nguyen HP, Seto NO, MacKenzie CR, Brade L, Kosma P, Brade H, Evans SV Nat Struct Biol. 2003 Dec;10(12):1019-25. Epub 2003 Nov 16. PMID:14625588<ref>PMID:14625588</ref>
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
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==See Also==
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</div>
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*[[Antibody 3D structures|Antibody 3D structures]]
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== References ==
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*[[3D structures of non-human antibody|3D structures of non-human antibody]]
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Large Structures]]
[[Category: Mus musculus]]
[[Category: Mus musculus]]
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[[Category: Brade, H.]]
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[[Category: Brade H]]
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[[Category: Brade, L.]]
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[[Category: Brade L]]
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[[Category: Evans, S V.]]
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[[Category: Evans SV]]
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[[Category: Kosma, P.]]
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[[Category: Kosma P]]
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[[Category: Mackenzie, C R.]]
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[[Category: Mackenzie CR]]
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[[Category: Nguyen, H P.]]
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[[Category: Nguyen HP]]
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[[Category: Seto, N O.]]
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[[Category: Seto NO]]
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[[Category: Anti-carbohydrate]]
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[[Category: Anti-lp]]
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[[Category: Antibody]]
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[[Category: Antigen-binding fragment]]
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[[Category: Fab]]
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[[Category: Immune system]]
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[[Category: Immunoglobulin]]
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[[Category: Kdo]]
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Current revision

S25-2- KDO monosaccharide complex

PDB ID 3t4y

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