This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3t0x

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:38, 6 July 2022) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Fluorogen Activating Protein M8VLA4(S55P) in complex with dimethylindole red==
==Fluorogen Activating Protein M8VLA4(S55P) in complex with dimethylindole red==
-
<StructureSection load='3t0x' size='340' side='right' caption='[[3t0x]], [[Resolution|resolution]] 1.96&Aring;' scene=''>
+
<StructureSection load='3t0x' size='340' side='right'caption='[[3t0x]], [[Resolution|resolution]] 1.96&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3t0x]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T0X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3T0X FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3t0x]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T0X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3T0X FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DIW:1-(3-SULFOPROPYL)-4-[(1E,3E)-3-(1,3,3-TRIMETHYL-1,3-DIHYDRO-2H-INDOL-2-YLIDENE)PROP-1-EN-1-YL]QUINOLINIUM'>DIW</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DIW:1-(3-SULFOPROPYL)-4-[(1E,3E)-3-(1,3,3-TRIMETHYL-1,3-DIHYDRO-2H-INDOL-2-YLIDENE)PROP-1-EN-1-YL]QUINOLINIUM'>DIW</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
-
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3t0v|3t0v]], [[3t0w|3t0w]]</td></tr>
+
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3t0v|3t0v]], [[3t0w|3t0w]]</div></td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3t0x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3t0x OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3t0x RCSB], [http://www.ebi.ac.uk/pdbsum/3t0x PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3t0x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3t0x OCA], [https://pdbe.org/3t0x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3t0x RCSB], [https://www.ebi.ac.uk/pdbsum/3t0x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3t0x ProSAT]</span></td></tr>
-
<table>
+
</table>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 14: Line 15:
A Variable Light Domain Fluorogen Activating Protein Homodimerizes To Activate Dimethylindole Red.,Senutovitch N, Stanfield RL, Bhattacharyya S, Rule GS, Wilson IA, Armitage BA, Waggoner AS, Berget PB Biochemistry. 2012 Mar 14. PMID:22390683<ref>PMID:22390683</ref>
A Variable Light Domain Fluorogen Activating Protein Homodimerizes To Activate Dimethylindole Red.,Senutovitch N, Stanfield RL, Bhattacharyya S, Rule GS, Wilson IA, Armitage BA, Waggoner AS, Berget PB Biochemistry. 2012 Mar 14. PMID:22390683<ref>PMID:22390683</ref>
-
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 3t0x" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Homo sapiens]]
+
[[Category: Human]]
-
[[Category: Armitage, B.]]
+
[[Category: Large Structures]]
-
[[Category: Berget, P.]]
+
[[Category: Armitage, B]]
-
[[Category: Bhattacharyya, S.]]
+
[[Category: Berget, P]]
-
[[Category: Rule, G.]]
+
[[Category: Bhattacharyya, S]]
-
[[Category: Senutovitch, N.]]
+
[[Category: Rule, G]]
-
[[Category: Stanfield, R.]]
+
[[Category: Senutovitch, N]]
-
[[Category: Waggoner, A S.]]
+
[[Category: Stanfield, R]]
-
[[Category: Wilson, I A.]]
+
[[Category: Waggoner, A S]]
 +
[[Category: Wilson, I A]]
[[Category: Dimethylindole red]]
[[Category: Dimethylindole red]]
[[Category: Dye-binding protein]]
[[Category: Dye-binding protein]]
[[Category: Fluorogen activation]]
[[Category: Fluorogen activation]]
[[Category: Immunoglobulin fold]]
[[Category: Immunoglobulin fold]]

Current revision

Fluorogen Activating Protein M8VLA4(S55P) in complex with dimethylindole red

PDB ID 3t0x

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools