This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2dd6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:34, 16 August 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Solution structure of Dermaseptin antimicrobial peptide truncated, mutated analog, K4-S4(1-13)a==
==Solution structure of Dermaseptin antimicrobial peptide truncated, mutated analog, K4-S4(1-13)a==
-
<StructureSection load='2dd6' size='340' side='right' caption='[[2dd6]], [[NMR_Ensembles_of_Models | 15 NMR models]]' scene=''>
+
<StructureSection load='2dd6' size='340' side='right'caption='[[2dd6]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2dd6]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DD6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DD6 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2dd6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Phyllomedusa_sauvagii Phyllomedusa sauvagii]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DD6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DD6 FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2dcx|2dcx]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dd6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dd6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dd6 RCSB], [http://www.ebi.ac.uk/pdbsum/2dd6 PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dd6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dd6 OCA], [https://pdbe.org/2dd6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dd6 RCSB], [https://www.ebi.ac.uk/pdbsum/2dd6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dd6 ProSAT]</span></td></tr>
-
<table>
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DRS4_PHYSA DRS4_PHYSA] Potent antimicrobial peptide with activity against bacteria and protozoa (By similarity). Also has activity against fungi (PubMed:8306981). Also shows activity against enveloped herpes simplex virus type 1 (PubMed:11782932). Probably acts by disturbing membrane functions with its amphipathic structure (Probable). Binds to healthy erythrocytes (this binding is receptor independent), and has strong hemolytic activity (PubMed:9395500). Does not bind to P.falciparum infected erythrocytes, but accumulates within the parasite (PubMed:9395500). Kills the parasite, and only at high concentrations has a hemolytic activity on the host cell (PubMed:9395500). In vitro, shows high spermicidal activities (PubMed:16307969).[UniProtKB:P24302]<ref>PMID:11782932</ref> <ref>PMID:16307969</ref> <ref>PMID:8306981</ref> <ref>PMID:9395500</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 15: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 2dd6" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Fish, A.]]
+
[[Category: Large Structures]]
-
[[Category: Mor, A.]]
+
[[Category: Phyllomedusa sauvagii]]
-
[[Category: Rotem, S.]]
+
[[Category: Fish A]]
-
[[Category: Shalev, D E.]]
+
[[Category: Mor A]]
-
[[Category: Alpha helix]]
+
[[Category: Rotem S]]
-
[[Category: Antimicrobial protein]]
+
[[Category: Shalev DE]]

Current revision

Solution structure of Dermaseptin antimicrobial peptide truncated, mutated analog, K4-S4(1-13)a

PDB ID 2dd6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools