This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4f55

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:10, 1 March 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal Structure of the Catalytic Domain of the Bacillus cereus SleB Protein==
==Crystal Structure of the Catalytic Domain of the Bacillus cereus SleB Protein==
-
<StructureSection load='4f55' size='340' side='right' caption='[[4f55]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
+
<StructureSection load='4f55' size='340' side='right'caption='[[4f55]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4f55]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_cereus Bacillus cereus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4F55 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4F55 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4f55]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_cereus_ATCC_14579 Bacillus cereus ATCC 14579]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4F55 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4F55 FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene><br>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BC_2753, sleB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1396 Bacillus cereus])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4f55 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4f55 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4f55 RCSB], [http://www.ebi.ac.uk/pdbsum/4f55 PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4f55 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4f55 OCA], [https://pdbe.org/4f55 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4f55 RCSB], [https://www.ebi.ac.uk/pdbsum/4f55 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4f55 ProSAT]</span></td></tr>
-
<table>
+
</table>
-
<div style="background-color:#fffaf0;">
+
== Function ==
-
== Publication Abstract from PubMed ==
+
[https://www.uniprot.org/uniprot/SLEB_BACCR SLEB_BACCR] Probable N-acetylmuramyl-L-alanine amidase. Required for spore cortex hydrolysis during germination. May form a complex with some hydrophobic spore component, leading to a stabilization of the enzyme in a spore-bound form (By similarity).
-
The SleB protein is one of two redundant cortex-lytic enzymes (CLEs) that initiate the degradation of cortex peptidoglycan (PG), a process essential for germination of spores of Bacillus species including Bacillus anthracis. SleB has been characterized as a soluble lytic transglycosylase that specifically recognizes spore cortex PG and catalyzes the cleavage of glycosidic bonds between N-acetylmuramic acid (NAM) and N-acetylglucosamine residues with concomitant formation of a 1,6-anhydro bond in the NAM residue. We found that like the full-length Bacillus cereus SleB, the catalytic C-terminal domain (SleB(C)) exhibited high degradative activity on cortex PG in vitro, although SleB's N-terminal domain thought to bind PG was inactive. The 1.85 A crystal structure of SleB(C) reveals an ellipsoid molecule with two distinct domains dominated by either alpha helices or beta strands. The overall fold of SleB closely resembles that of the catalytic domain of the family 1 lytic transglycosylases, but with a completely different topological arrangement. Structural analysis shows that an invariant Glu157 of SleB is in an equivalent position to the catalytic glutamate in other lytic transglycosylases. Indeed, SleB bearing a Glu157-to-Gln mutation lost its cortex degradative activity completely. In addition, the other redundant CLE (called CwlJ) in Bacillus species likely has a similar three-dimensional structure to SleB, including the invariant putative catalytic Glu residue. SleB and CwlJ may offer novel targets for the development of antispore agents.
+
-
 
+
-
Crystal Structure of the Catalytic Domain of the Bacillus cereus SleB Protein Important in Cortex Peptidoglycan Degradation During Spore Germination.,Li Y, Jin K, Setlow B, Setlow P, Hao B J Bacteriol. 2012 Jun 22. PMID:22730118<ref>PMID:22730118</ref>
+
-
 
+
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+
-
</div>
+
-
== References ==
+
-
<references/>
+
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus cereus]]
+
[[Category: Bacillus cereus ATCC 14579]]
-
[[Category: Hao, B.]]
+
[[Category: Large Structures]]
-
[[Category: Hydrolase]]
+
[[Category: Hao B]]
-
[[Category: Lytic transglycosylase]]
+

Current revision

Crystal Structure of the Catalytic Domain of the Bacillus cereus SleB Protein

PDB ID 4f55

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4f55"
Personal tools