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1bt9

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[[Image:1bt9.jpg|left|200px]]
 
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{{Structure
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==OMPF PORIN MUTANT D74A==
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|PDB= 1bt9 |SIZE=350|CAPTION= <scene name='initialview01'>1bt9</scene>, resolution 3.0&Aring;
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<StructureSection load='1bt9' size='340' side='right'caption='[[1bt9]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND=
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<table><tr><td colspan='2'>[[1bt9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_B Escherichia coli B]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BT9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BT9 FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
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|GENE=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bt9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bt9 OCA], [https://pdbe.org/1bt9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bt9 RCSB], [https://www.ebi.ac.uk/pdbsum/1bt9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bt9 ProSAT]</span></td></tr>
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}}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/OMPF_ECOLI OMPF_ECOLI] Forms pores that allow passive diffusion of small molecules across the outer membrane. It is also a receptor for the bacteriophage T2.<ref>PMID:19721064</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bt/1bt9_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1bt9 ConSurf].
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<div style="clear:both"></div>
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'''OMPF PORIN MUTANT D74A'''
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==See Also==
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*[[Porin 3D structures|Porin 3D structures]]
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== References ==
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==Overview==
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<references/>
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The channel-forming protein OmpF porin from Escherichia coli spans the bacterial outer membrane. Each of the three monomers comprises a hollow, 16-stranded beta-barrel. These are associated to homotrimers which are unusually stable, due mostly to hydrophobic interactions between the beta-barrels. In addition, a loop, L2 connects one subunit to its neighbor by latching into its channel. Residue E71 on loop 2 is integrated into an ionic network and forms salt bridges and hydrogen bonds with R100 and R132 on the channel wall in the adjacent subunit. To examine these contributions quantitatively, six single-site, two double, and one deletion mutant were constructed on the basis of the atomic coordinates of the protein. Differential scanning calorimetric analysis showed that the salt-bridge, E71-R100, contributes significantly to trimer stability: the substitution E71Q causes a decrease of the transition temperature from 72 to 48 degreesC, with DeltaHcal diminishing from 430 to 201 kcal mol-1. A nearby substitution in the loop, D74N, has lesser effects on thermal stability, while the deletion in L2 (Delta69-77) has an effect comparable to that of E71Q. X-ray structure analysis to 3.0 A resolution revealed only local structural differences in the mutants except for the substitution R100A, where another residue, R132, is found to fill the gap left by the truncated side chain of A100. Functional assays in planar lipid bilayers show significantly increased cation selectivities if the charge distribution was affected.
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Escherichia coli B]]
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1BT9 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BT9 OCA].
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[[Category: Large Structures]]
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[[Category: Philippsen A]]
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==Reference==
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[[Category: Schirmer T]]
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Stability of trimeric OmpF porin: the contributions of the latching loop L2., Phale PS, Philippsen A, Kiefhaber T, Koebnik R, Phale VP, Schirmer T, Rosenbusch JP, Biochemistry. 1998 Nov 10;37(45):15663-70. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9843370 9843370]
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[[Category: Escherichia coli]]
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[[Category: Single protein]]
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[[Category: Philippsen, A.]]
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[[Category: Schirmer, T.]]
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[[Category: integral membrane protein porin]]
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[[Category: membrane protein]]
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[[Category: porin]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 10:15:33 2008''
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Current revision

OMPF PORIN MUTANT D74A

PDB ID 1bt9

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