3tcj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:23, 14 March 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
 +
==CcdB dimer from V. fisheri in complex with one C-terminal domain of F-plasmid CcdA==
==CcdB dimer from V. fisheri in complex with one C-terminal domain of F-plasmid CcdA==
-
<StructureSection load='3tcj' size='340' side='right' caption='[[3tcj]], [[Resolution|resolution]] 1.93&Aring;' scene=''>
+
<StructureSection load='3tcj' size='340' side='right'caption='[[3tcj]], [[Resolution|resolution]] 1.93&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3tcj]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Aliivibrio_fischeri Aliivibrio fischeri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TCJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3TCJ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3tcj]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Aliivibrio_fischeri Aliivibrio fischeri] and [https://en.wikipedia.org/wiki/Escherichia_coli_O157:H7 Escherichia coli O157:H7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TCJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3TCJ FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene><br>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.93&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3jrz|3jrz]], [[3jsc|3jsc]], [[3ku8|3ku8]], [[3kua|3kua]], [[3hpw|3hpw]], [[3g7f|3g7f]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr>
-
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ccdB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=668 Aliivibrio fischeri])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3tcj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3tcj OCA], [https://pdbe.org/3tcj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3tcj RCSB], [https://www.ebi.ac.uk/pdbsum/3tcj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3tcj ProSAT]</span></td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3tcj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3tcj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3tcj RCSB], [http://www.ebi.ac.uk/pdbsum/3tcj PDBsum]</span></td></tr>
+
</table>
-
<table>
+
== Function ==
-
<div style="background-color:#fffaf0;">
+
[https://www.uniprot.org/uniprot/Q84B82_ALIFS Q84B82_ALIFS]
-
== Publication Abstract from PubMed ==
+
-
The ccd toxin-antitoxin module from the Escherichia coli F plasmid has a homologue on the Vibrio fischeri integron. The homologue of the toxin (CcdB(Vfi)) was crystallized in two different crystal forms. The first form belongs to space group I23 or I2(1)3, with unit-cell parameter a = 84.5 A, and diffracts to 1.5 A resolution. The second crystal form belongs to space group C2, with unit-cell parameters a = 58.5, b = 43.6, c = 37.5 A, beta = 110.0 degrees, and diffracts to 1.7 A resolution. The complex of CcdB(Vfi) with the GyrA14(Vfi) fragment of V. fischeri gyrase crystallizes in space group P2(1)2(1)2(1), with unit-cell parameters a = 53.5, b = 94.6, c = 58.1 A, and diffracts to 2.2 A resolution. The corresponding mixed complex with E. coli GyrA14(Ec) crystallizes in space group C2, with unit-cell parameters a = 130.1, b = 90.8, c = 58.1 A, beta = 102.6 degrees, and diffracts to 1.95 A. Finally, a complex between CcdB(Vfi) and part of the F-plasmid antitoxin CcdA(F) crystallizes in space group P2(1)2(1)2(1), with unit-cell parameters a = 46.9, b = 62.6, c = 82.0 A, and diffracts to 1.9 A resolution.
+
-
 
+
-
Purification and crystallization of Vibrio fischeri CcdB and its complexes with fragments of gyrase and CcdA.,De Jonge N, Buts L, Vangelooven J, Mine N, Van Melderen L, Wyns L, Loris R Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Apr 1;63(Pt, 4):356-60. Epub 2007 Mar 30. PMID:17401216<ref>PMID:17401216</ref>
+
-
 
+
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+
-
</div>
+
-
== References ==
+
-
<references/>
+
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Aliivibrio fischeri]]
[[Category: Aliivibrio fischeri]]
-
[[Category: Jonge, Natalie De.]]
+
[[Category: Escherichia coli O157:H7]]
-
[[Category: Loris, Remy.]]
+
[[Category: Large Structures]]
-
[[Category: Alpha+beta sh3 domain intrinsically disordered]]
+
[[Category: De Jonge N]]
-
[[Category: Toxin-antitoxin complex]]
+
[[Category: Loris R]]

Current revision

CcdB dimer from V. fisheri in complex with one C-terminal domain of F-plasmid CcdA

PDB ID 3tcj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3tcj"
Personal tools