4h3d

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:59, 20 September 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
 +
==1.95 Angstrom Crystal Structure of of Type I 3-Dehydroquinate Dehydratase (aroD) from Clostridium difficile with Covalent Modified Comenic Acid.==
==1.95 Angstrom Crystal Structure of of Type I 3-Dehydroquinate Dehydratase (aroD) from Clostridium difficile with Covalent Modified Comenic Acid.==
-
<StructureSection load='4h3d' size='340' side='right' caption='[[4h3d]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
+
<StructureSection load='4h3d' size='340' side='right'caption='[[4h3d]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4h3d]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Clod6 Clod6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H3D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4H3D FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4h3d]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridioides_difficile_630 Clostridioides difficile 630]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H3D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4H3D FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=SHL:5-HYDROXY-6-METHYL-4-OXO-4H-PYRAN-2-CARBOXYLIC+ACID'>SHL</scene><br>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3js3|3js3]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=SHL:5-HYDROXY-6-METHYL-4-OXO-4H-PYRAN-2-CARBOXYLIC+ACID'>SHL</scene></td></tr>
-
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">aroD, CD630_22170 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272563 CLOD6])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4h3d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4h3d OCA], [https://pdbe.org/4h3d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4h3d RCSB], [https://www.ebi.ac.uk/pdbsum/4h3d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4h3d ProSAT]</span></td></tr>
-
<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-dehydroquinate_dehydratase 3-dehydroquinate dehydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.10 4.2.1.10] </span></td></tr>
+
</table>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4h3d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4h3d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4h3d RCSB], [http://www.ebi.ac.uk/pdbsum/4h3d PDBsum]</span></td></tr>
+
== Function ==
-
<table>
+
[https://www.uniprot.org/uniprot/AROD_CLOD6 AROD_CLOD6]
==See Also==
==See Also==
-
*[[Dehydroquinase|Dehydroquinase]]
+
*[[Dehydroquinase 3D structures|Dehydroquinase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: 3-dehydroquinate dehydratase]]
+
[[Category: Clostridioides difficile 630]]
-
[[Category: Clod6]]
+
[[Category: Large Structures]]
-
[[Category: Anderson, W F.]]
+
[[Category: Anderson WF]]
-
[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
+
[[Category: Duban M-E]]
-
[[Category: Duban, M-E.]]
+
[[Category: Dubrovska I]]
-
[[Category: Dubrovska, I.]]
+
[[Category: Light SH]]
-
[[Category: Light, S H.]]
+
[[Category: Minasov G]]
-
[[Category: Minasov, G.]]
+
[[Category: Papazisi L]]
-
[[Category: Papazisi, L.]]
+
[[Category: Shuvalova L]]
-
[[Category: Shuvalova, L.]]
+
[[Category: Winsor J]]
-
[[Category: Winsor, J.]]
+
-
[[Category: 3-dehydroquinate dehydratase activity]]
+
-
[[Category: Aldolase class i]]
+
-
[[Category: Center for structural genomics of infectious disease]]
+
-
[[Category: Csgid]]
+
-
[[Category: Lyase]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Tim barrel]]
+

Current revision

1.95 Angstrom Crystal Structure of of Type I 3-Dehydroquinate Dehydratase (aroD) from Clostridium difficile with Covalent Modified Comenic Acid.

PDB ID 4h3d

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools