This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3syk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:16, 29 June 2022) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of the AAA+ protein CbbX, selenomethionine structure==
==Crystal structure of the AAA+ protein CbbX, selenomethionine structure==
-
<StructureSection load='3syk' size='340' side='right' caption='[[3syk]], [[Resolution|resolution]] 3.08&Aring;' scene=''>
+
<StructureSection load='3syk' size='340' side='right'caption='[[3syk]], [[Resolution|resolution]] 3.08&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3syk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"rhodococcus_capsulatus"_molisch_1907 "rhodococcus capsulatus" molisch 1907]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SYK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3SYK FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3syk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"rhodococcus_capsulatus"_molisch_1907 "rhodococcus capsulatus" molisch 1907]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SYK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3SYK FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3syl|3syl]], [[3zuh|3zuh]]</td></tr>
+
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3syl|3syl]], [[3zuh|3zuh]]</div></td></tr>
-
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cbbX, RSKD131_2679 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1063 "Rhodococcus capsulatus" Molisch 1907])</td></tr>
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cbbX, RSKD131_2679 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1063 "Rhodococcus capsulatus" Molisch 1907])</td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3syk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3syk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3syk RCSB], [http://www.ebi.ac.uk/pdbsum/3syk PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3syk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3syk OCA], [https://pdbe.org/3syk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3syk RCSB], [https://www.ebi.ac.uk/pdbsum/3syk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3syk ProSAT]</span></td></tr>
-
<table>
+
</table>
 +
== Function ==
 +
[[https://www.uniprot.org/uniprot/CBBX_RHOSH CBBX_RHOSH]] Seems to be necessary for the expression of RuBisCO.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 17: Line 20:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 3syk" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
Line 22: Line 26:
</StructureSection>
</StructureSection>
[[Category: Rhodococcus capsulatus molisch 1907]]
[[Category: Rhodococcus capsulatus molisch 1907]]
-
[[Category: Bracher, A.]]
+
[[Category: Large Structures]]
-
[[Category: Hartl, F U.]]
+
[[Category: Bracher, A]]
-
[[Category: Hayer-Hartl, M.]]
+
[[Category: Hartl, F U]]
-
[[Category: Mueller-Cajar, O.]]
+
[[Category: Hayer-Hartl, M]]
-
[[Category: Stotz, M.]]
+
[[Category: Mueller-Cajar, O]]
-
[[Category: Wendler, P.]]
+
[[Category: Stotz, M]]
 +
[[Category: Wendler, P]]
[[Category: Aaa+ protein]]
[[Category: Aaa+ protein]]
[[Category: Calvin cycle]]
[[Category: Calvin cycle]]

Current revision

Crystal structure of the AAA+ protein CbbX, selenomethionine structure

PDB ID 3syk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools