2mbx

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==Structure, dynamics and stability of allergen cod parvalbumin Gad m 1 by solution and high-pressure NMR.==
==Structure, dynamics and stability of allergen cod parvalbumin Gad m 1 by solution and high-pressure NMR.==
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<StructureSection load='2mbx' size='340' side='right' caption='[[2mbx]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
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<StructureSection load='2mbx' size='340' side='right'caption='[[2mbx]]' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[2mbx]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MBX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2MBX FirstGlance]. <br>
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<table><tr><td colspan='2'>[[2mbx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gadus_morhua Gadus morhua]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MBX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2MBX FirstGlance]. <br>
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</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene><br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2mbx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mbx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2mbx RCSB], [http://www.ebi.ac.uk/pdbsum/2mbx PDBsum]</span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
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<table>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2mbx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mbx OCA], [https://pdbe.org/2mbx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2mbx RCSB], [https://www.ebi.ac.uk/pdbsum/2mbx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2mbx ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PRVB_GADMO PRVB_GADMO] In muscle, parvalbumin is thought to be involved in relaxation after contraction. It binds two calcium ions (By similarity).
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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Gad m 1 is the major allergen from Atlantic cod. It belongs to beta-parvalbumin protein family and is characterized by the presence of two calcium-binding sites so called EF-hand motifs. beta-Parvalbumins such as Gad m 1 are the most important fish allergens and their high cross-reactivity is the cause of the observed polysensitization to various fish species in allergic patients. Despite extensive efforts, the complete elucidation of beta-parvalbumin-IgE complexes has not been achieved yet. Allergen structural studies are essential for the development of novel immunotherapy strategies, including vaccination with hypoallergenic derivatives and chimeric molecules. Here, we report for the first time the NMR study of a beta-parvalbumin: Gad m 1. This report includes: (1)H, (13)C and (15)N resonance assignments of Gad m 1 as well as the second structure information based on the (13)C chemical shifts.
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Beta-parvalbumins from different fish species have been identified as the main elicitors of IgE-mediated reactions in fish-allergic individuals. Here, we report for the first time the NMR determination of the structure and dynamics of the major Atlantic cod (Gadus morhua) allergen Gad m 1 and compare them with other known parvalbumins. Although the Gad m 1 structure and accessibility of putative IgE epitopes are similar to parvalbumins in mackerel and carp, the charge distribution at the putative epitopes is different. The determination of the Gad m 1 structure contributes to a better understanding of cross-reactivity among fish parvalbumins. In addition, the high-pressure NMR and temperature variation experiments revealed the important contribution of the AB motif and other regions to the protein folding. This structural information could assist the future identification of hot spots for targeted mutations to develop hypoallergenic Ca(2+) -free forms for potential use in immunotherapy. Proteins 2014; 82:3032-3042. (c) 2014 Wiley Periodicals, Inc.
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(1)H, (1)(3)C and (1)(5)N resonance assignments and second structure information of Gad m 1: a beta-parvalbumin allergen from Atlantic cod (Gadus morhua).,Moraes AH, Ackerbauer D, Kostadinova M, Bublin M, Ferreira F, Almeida FC, Breiteneder H, Valente AP Biomol NMR Assign. 2013 Oct;7(2):133-6. doi: 10.1007/s12104-012-9393-y. Epub 2012, May 15. PMID:22585088<ref>PMID:22585088</ref>
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Solution and high-pressure NMR studies of the structure, dynamics, and stability of the cross-reactive allergenic cod parvalbumin Gad m 1.,Moraes AH, Ackerbauer D, Kostadinova M, Bublin M, de Oliveira GA, Ferreira F, Almeida FC, Breiteneder H, Valente AP Proteins. 2014 Nov;82(11):3032-42. doi: 10.1002/prot.24664. Epub 2014 Aug 30. PMID:25116395<ref>PMID:25116395</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2mbx" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Parvalbumin|Parvalbumin]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Ackerbauer, D.]]
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[[Category: Gadus morhua]]
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[[Category: Almeida, F C.L.]]
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[[Category: Large Structures]]
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[[Category: Breiteneder, H.]]
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[[Category: Ackerbauer D]]
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[[Category: Bublin, M.]]
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[[Category: Almeida FCL]]
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[[Category: Ferreira, F.]]
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[[Category: Breiteneder H]]
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[[Category: Moraes, A H.]]
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[[Category: Bublin M]]
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[[Category: Valente, A.]]
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[[Category: Ferreira F]]
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[[Category: Allergen]]
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[[Category: Moraes AH]]
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[[Category: Contractile protein]]
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[[Category: Valente A]]
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[[Category: Ef-hand]]
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[[Category: Parvalbumin]]
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Structure, dynamics and stability of allergen cod parvalbumin Gad m 1 by solution and high-pressure NMR.

PDB ID 2mbx

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