We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

Hexokinase

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:55, 11 January 2023) (edit) (undo)
 
(23 intermediate revisions not shown.)
Line 1: Line 1:
-
<StructureSection load='1qha' size='450' side='right' scene='' caption='Hexokinase I complex with ATP analog, glucose, glucose-phosphate and Mg+2 ion (PDB code [[1qha]])'>
+
<StructureSection load='1qha' size='350' side='right' scene='' caption='Hexokinase I complex with ATP analog, glucose, glucose-phosphate and Mg+2 ion (PDB code [[1qha]])'>
-
'''Hexokinase''' is an enzyme that phosphorylates a six-carbon sugar, a hexose, to a hexose phosphate. In most tissues and organisms, glucose is the most important substrate of hexokinases, and glucose 6-phosphate the most important product. Hexokinases have been found in every organism checked, ranging from bacteria, yeast, and plants, to humans and other vertebrates. They are categorized as actin fold proteins, sharing a common ATP binding site core surrounded by more variable sequences that determine substrate affinities and other properties. Several hexokinase isoforms or isozymes providing different functions can occur in a single species.
+
__TOC__
 +
== Function ==
 +
'''Hexokinase''' is an enzyme that phosphorylates a six-carbon sugar, a hexose, to a hexose phosphate. In most tissues and organisms, glucose is the most important substrate of hexokinases, and glucose 6-phosphate the most important product. Hexokinases have been found in every organism checked, ranging from bacteria, yeast, and plants, to humans and other vertebrates. They are categorized as actin fold proteins, sharing a common ATP binding site core surrounded by more variable sequences that determine substrate affinities and other properties. Several hexokinase isoforms or isozymes providing different functions can occur in a single species. See [[Glycolysis Enzymes]], [[Glycogenesis]].
* '''Hexokinase I/A''' is found in all mammalian tissues, and is considered a "housekeeping enzyme," unaffected by most physiological, hormonal, and metabolic changes. More details in [[Hexokinase Type 1]].
* '''Hexokinase I/A''' is found in all mammalian tissues, and is considered a "housekeeping enzyme," unaffected by most physiological, hormonal, and metabolic changes. More details in [[Hexokinase Type 1]].
Line 10: Line 12:
* '''Hexokinase IV/D''' is also known as '''glucokinase'''.
* '''Hexokinase IV/D''' is also known as '''glucokinase'''.
-
Additional details in [[The Structure and Mechanism of Hexokinase]].
+
Additional details in [[The Structure and Mechanism of Hexokinase]], [[Glucokinase and Phosphorylase. Conformational changes (Spanish)]] and [[Conformational changes in proteins]] (in Spanish).
== Structure of Hexokinase ==
== Structure of Hexokinase ==
Line 17: Line 19:
[[Image:Hexokinase_mechanism2.GIF|350px|left|thumb]]
[[Image:Hexokinase_mechanism2.GIF|350px|left|thumb]]
{{Clear}}
{{Clear}}
 +
== Conformational change associated with substrate binding ==
 +
 +
When hexokinase binds to glucose (one of its two substrates), it exhibits induced fit. This means that in the open form of the enzyme, the binding site is not fully formed. Upon binding glucose, hexokinase switches into a closed form, excluding aqueous solvent from the substrate. This is illustrated here <scene name='45/452482/Induced_fit/2'>comparing the structures of free and glucose-bound hexokinase</scene>.
 +
 +
<jmol>
 +
<jmolRadioGroup>
 +
<item>
 +
<script>anim off; delay 0.5; model 1</script>
 +
<text>Open</text>
 +
<checked>true</checked>
 +
</item>
 +
<item>
 +
<script>anim off; delay 0.5; model 2</script>
 +
<text>Close</text>
 +
<checked>false</checked>
 +
</item>
 +
<item>
 +
<script>anim mode palindrome; anim on</script>
 +
<text>Animate</text>
 +
<checked>false</checked>
 +
</item>
 +
</jmolRadioGroup>
 +
</jmol>
 +
 +
It is a bit easier to see the extent and nature of the changes in this <jmol>
 +
<jmolLink>
 +
<script> script "/wiki/images/a/a2/Storymorph.spt"; model 2; color background black;
 +
structures = [{1.1},{1.2}];
 +
domain2 = {82-210};
 +
domains = [ [{protein and (14-486) and not domain2},{protein and (17-486) and not domain2},{protein and (17-486) and not domain2}],[domain2, {(81,211)}],[{glc}],];
 +
timing = [[0, 1.0, 0],[0.3, 1.0, 0], [0, 0.41, 0]];
 +
morph(10,structures,domains,timing);
 +
</script>
 +
<text>morph</text>
 +
</jmolLink>
 +
</jmol> <ref>The [[Jmol/Storymorph|Storymorph Jmol scripts]] creates the interpolated coordinates of the morph on the fly.</ref>.
 +
== Mechanism of Hexokinase ==
== Mechanism of Hexokinase ==
Line 26: Line 65:
G6P inhibits hexokinase by binding to the N-terminal domain(this is simple feedback inhibition). It competitively inhibits the binding of ATP [8]. If the cell is not using the G6P that it is making, then it stops making it. In this way, hexokinase can also slow down glycolysis. Hexokinase I is thought to be the "pacemaker" of glycolysis in brain tissue and red blood cells [4]. Inorganic phosphate allosterically relieves hexokinase of inhibition by G6P [8].
G6P inhibits hexokinase by binding to the N-terminal domain(this is simple feedback inhibition). It competitively inhibits the binding of ATP [8]. If the cell is not using the G6P that it is making, then it stops making it. In this way, hexokinase can also slow down glycolysis. Hexokinase I is thought to be the "pacemaker" of glycolysis in brain tissue and red blood cells [4]. Inorganic phosphate allosterically relieves hexokinase of inhibition by G6P [8].
-
</StructureSection>
 
==3D structures of hexokinase==
==3D structures of hexokinase==
 +
[[Hexokinase 3D structures]]
-
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
+
</StructureSection>
-
 
+
-
[[3o08]], [[3o1b]], [[3o1w]], [[3o4w]], [[3o6w]], [[3o80]], [[4jax]] – KlHK – ''Kluyveromyces lactis''<br />
+
-
[[2e2n]] – StHK – ''Sulfolobus tokodaii''<br />
+
-
[[2e2o]] - StHK + glucose<br />
+
-
[[2e2p]] – StHK + ADP<br />
+
-
[[2e2q]] - StHK + ADP + xylose + Mg<br />
+
-
[[3o5b]], [[3o8m]] – KlHK + glucose<br />
+
-
[[1bdg]] – HK + glucose – ''Schistosoma mansoni''
+
-
 
+
-
===Hexokinase I===
+
-
 
+
-
[[3b8a]] – yHK I + glucose – yeast<br />
+
-
[[1hkg]] – yHK I<br />
+
-
[[1dgk]] – hHK I (mutant) + ADP + glucose – human<br />
+
-
[[1cza]] - hHK I (mutant) + ADP + glucose-6-phosphate + glucose<br />
+
-
[[1bg3]] - HK I + glucose-6-phosphate + glucose - rat<br />
+
-
[[1qha]] – hHK I + AMP-PNP<br />
+
-
[[1hkc]] - hHK I + phosphate + glucose<br />
+
-
[[1hkb]], [[4f9o]] - hHK I + glucose-6-phosphate + glucose<br />
+
-
[[4fpa]] - hHK I (mutant) + glucose-6-phosphate + glucose<br />
+
-
[[4foe]] - hHK I + mannose-6-phosphate + glucose<br />
+
-
[[4foi]] - hHK I (mutant) + glucose 1,6-bisphosphate + glucose<br />
+
-
[[4fpb]] - hHK I + 1,5-anhydroglucitol-6-phosphate + glucose<br />
+
-
 
+
-
===Hexokinase II===
+
-
 
+
-
[[1ig8]], [[2yhx]] – yHK II<br />
+
-
[[2nzt]] – hHK II
+
-
 
+
-
===Hexokinase III===
+
-
 
+
-
[[3hm8]] – hHK III C terminal
+
-
 
+
-
===Hexokinase IV (Glucokinase GK)===
+
-
 
+
-
[[3qic]] – hHK IV residues 12-465 (mutant) <br />
+
-
[[1v4t]] – hGK <br />
+
-
[[3mcp]] – GK – ''Parabacterioides distasonis''<br />
+
-
[[2qm1]] – GK – ''Enterococcus faecalis''<br />
+
-
[[3vgk]] – SgGK – ''Streptomyces griseus''<br />
+
-
[[1q18]] – EcGK – ''Escherichia coli''<br />
+
-
[[4eun]] – GK – ''Janibacter''<br />
+
-
[[3vov]] – GK – ''Thermus thermophilus''
+
-
 
+
-
''Hexokinase IV binary complex''
+
-
 
+
-
[[1sz2]] - EcGK + glucose<br />
+
-
[[3vgm]] - SgGK + glucose<br />
+
-
[[3idh]] - hHK IV residues 12-465 + glucose<br />
+
-
[[3h1v]], [[3imx]], [[3a0i]], [[3goi]],[[1v4s]], [[3s41]], [[3vev]], [[3vf6]], [[4dch]], [[4dhy]] - hHK IV residues 12-465 + synthetic activator<br />
+
-
[[3fr0]], [[4l3q]], [[4ise]], [[4isf]], [[4isg]], [[4iwv]], [[4ixc]] - hHK IV residues 12-465 + activator<br />
+
-
 
+
-
''Hexokinase IV ternary complex''
+
-
 
+
-
[[3id8]], [[3fgu]] - hHK IV residues 12-465 + AMP-PNP + glucose<br />
+
-
[[3f9m]] - hHK IV residues 12-465 + activator + glucose<br />
+
-
[[2q2r]] - GK + glucose + ADP – ''Trypanosoma cruzi''<br />
+
-
[[3vgl]] - SgGK + glucose + AMP-PNP<BR />
+
-
[[3vey]] - hGK + glucose + ATPgS
+
-
 
+
-
===ADP-dependent GK===
+
-
 
+
-
[[1gc5]] – AGK + ADP – ''Thermococcus litoralis''<br />
+
-
[[1l2l]] – AGK – ''Pyrococcus horikoshii''<br />
+
-
[[1ua4]] - AGK – ''Pyrococcus furiosus''
+
==Additional Resources==
==Additional Resources==
For additional information, see: [[Carbohydrate Metabolism]]
For additional information, see: [[Carbohydrate Metabolism]]
- 
==References==
==References==
Line 117: Line 90:
8.↑ Aleshin A, Malfois M, Liu X, Kim C, Fromm H, Honzatko R, Koch M, Svergun D. Nonaggregating Mutant of Recombinant Human Hexokinase I Exhibits Wild-Type Kinetics and Rod-like Conformations in Solution. Biochem. 1999 Apr 29;38:8359-8366.
8.↑ Aleshin A, Malfois M, Liu X, Kim C, Fromm H, Honzatko R, Koch M, Svergun D. Nonaggregating Mutant of Recombinant Human Hexokinase I Exhibits Wild-Type Kinetics and Rod-like Conformations in Solution. Biochem. 1999 Apr 29;38:8359-8366.
-
 
+
<references/>
Seth Bawel and Kyle_Schroering created this page in Che 361 at Wabash College.
Seth Bawel and Kyle_Schroering created this page in Che 361 at Wabash College.
[[Category:Topic Page]]
[[Category:Topic Page]]

Current revision

Hexokinase I complex with ATP analog, glucose, glucose-phosphate and Mg+2 ion (PDB code 1qha)

Drag the structure with the mouse to rotate

Additional Resources

For additional information, see: Carbohydrate Metabolism

References

1.↑ Pollard-Knight D, Cornish-Bowden A. Mechanism of liver glucokinase. Mol Cell Biochem. 1982 Apr 30;44(2):71-80. PMID:7048063

2.↑ 2.0 2.1 Kamata K, Mitsuya M, Nishimura T, Eiki J, Nagata Y. Structural basis for allosteric regulation of the monomeric allosteric enzyme human glucokinase. Structure. 2004 Mar;12(3):429-38. PMID:15016359 doi:10.1016/j.str.2004.02.005

3.↑ Postic C, Shiota M, Magnuson MA. Cell-specific roles of glucokinase in glucose homeostasis. Recent Prog Horm Res. 2001;56:195-217. PMID:11237213

4.↑ Zeng C, Aleshin A, Hardie J, Harrison R, Fromm H. ATP-Binding site of Human Brain Hexokinase as Studied by Molecular Modeling and Site-Directed Mutagenesis. Biochem. 1996 Aug 6;35:13157-13164.

5.↑ hammes G, and Kochavi D. Studies of the Enzyme Hexokinase: Kinetic Inhibition by Products. Massachusetts Institute of Technology. 1961 Oct 5.

6.↑ Ralph E, Thomson J, Almaden J, Sun S. Glucose Modulation fo Glucokinase Activation by Small Molecules. Biochem. 2008 Feb 15;47:5028-5036.

7.↑ Pal P, and Miller B. Activating Mutations in the Human Glucokinase Gene Revealed by Genetic Selection. Biochem. 2008 Dec 3;48:814-816.

8.↑ Aleshin A, Malfois M, Liu X, Kim C, Fromm H, Honzatko R, Koch M, Svergun D. Nonaggregating Mutant of Recombinant Human Hexokinase I Exhibits Wild-Type Kinetics and Rod-like Conformations in Solution. Biochem. 1999 Apr 29;38:8359-8366.

  1. ↑ The Storymorph Jmol scripts creates the interpolated coordinates of the morph on the fly.

Seth Bawel and Kyle_Schroering created this page in Che 361 at Wabash College.

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Karsten Theis, Ann Taylor, Alexander Berchansky

Retrieved from "http://52.214.119.220/wiki/index.php/Hexokinase"
Personal tools