4r8m

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(New page: '''Unreleased structure''' The entry 4r8m is ON HOLD Authors: Teng,Y.B, Hao,Q, Lin,H.N, Jing,H Description: Human SIRT2 crystal structure in complex with BHJH-TM1)
Current revision (15:12, 8 November 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 4r8m is ON HOLD
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==Human SIRT2 crystal structure in complex with BHJH-TM1==
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<StructureSection load='4r8m' size='340' side='right'caption='[[4r8m]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4r8m]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4R8M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4R8M FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3LX:TRIDECANETHIAL'>3LX</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4r8m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4r8m OCA], [https://pdbe.org/4r8m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4r8m RCSB], [https://www.ebi.ac.uk/pdbsum/4r8m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4r8m ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/SIR2_HUMAN SIR2_HUMAN] NAD-dependent protein deacetylase, which deacetylates internal lysines on histone and non-histone proteins. Deacetylates 'Lys-40' of alpha-tubulin. Involved in the control of mitotic exit in the cell cycle, probably via its role in the regulation of cytoskeleton. Deacetylates PCK1, opposing proteasomal degradation. Deacetylates 'Lys-310' of RELA.<ref>PMID:12620231</ref> <ref>PMID:12697818</ref> <ref>PMID:21081649</ref> <ref>PMID:21726808</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Sirtuins are a class of enzymes originally identified as nicotinamide adenine dinucleotide (NAD)-dependent protein lysine deacetylases. Among the seven mammalian sirtuins, SIRT1-7, only SIRT1-3 possess efficient deacetylase activity in vitro, whereas SIRT4-7 possess very weak in vitro deacetylase activity. Several sirtuins that exhibit weak deacetylase activity have recently been shown to possess more efficient activity for the removal other acyl lysine modifications, such as succinyl lysine and palmitoyl lysine. Here, we demonstrate that even the well-known deacetylase SIRT2 possesses efficient activity for the removal of long-chain fatty acyl groups. The catalytic efficiency (kcat/Km) for the removal of a myristoyl group is slightly higher than that for the removal of an acetyl group. The crystal structure of SIRT2 in complex with a thiomyristoyl peptide reveals that SIRT2 possesses a large hydrophobic pocket that can accommodate the myristoyl group. Comparison of the SIRT2 acyl pocket to those of SIRT1, SIRT3, and SIRT6 reveals that the acyl pockets of SIRT1-3 are highly similar, and to a lesser degree, similar to that of SIRT6. The efficient in vitro demyristoylase activity of SIRT2 suggests that this activity may be physiologically relevant and warrants future investigative studies.
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Authors: Teng,Y.B, Hao,Q, Lin,H.N, Jing,H
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Efficient Demyristoylase Activity of SIRT2 Revealed by Kinetic and Structural Studies.,Teng YB, Jing H, Aramsangtienchai P, He B, Khan S, Hu J, Lin H, Hao Q Sci Rep. 2015 Feb 23;5:8529. doi: 10.1038/srep08529. PMID:25704306<ref>PMID:25704306</ref>
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Description: Human SIRT2 crystal structure in complex with BHJH-TM1
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 4r8m" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Histone deacetylase 3D structures|Histone deacetylase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Hao Q]]
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[[Category: Jing H]]
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[[Category: Lin HN]]
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[[Category: Teng YB]]

Current revision

Human SIRT2 crystal structure in complex with BHJH-TM1

PDB ID 4r8m

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