1e9v

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:24, 6 November 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1e9v.gif|left|200px]]
 
-
{{Structure
+
==XENON BOUND IN HYDROPHOBIC CHANNEL OF HYBRID CLUSTER PROTEIN FROM DESULFOVIBRIO VULGARIS==
-
|PDB= 1e9v |SIZE=350|CAPTION= <scene name='initialview01'>1e9v</scene>, resolution 1.7900&Aring;
+
<StructureSection load='1e9v' size='340' side='right'caption='[[1e9v]], [[Resolution|resolution]] 1.79&Aring;' scene=''>
-
|SITE= <scene name='pdbsite=FSO:Hydrophobic+Channel+Xe+Binding+Site'>FSO</scene>
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=FSO:IRON/SULFUR/OXYGEN+HYBRID+CLUSTER'>FSO</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=XE:XENON'>XE</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene>, <scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene> and <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
+
<table><tr><td colspan='2'>[[1e9v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1E9V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1E9V FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.79&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CSS:S-MERCAPTOCYSTEINE'>CSS</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene>, <scene name='pdbligand=XE:XENON'>XE</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1e9v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1e9v OCA], [https://pdbe.org/1e9v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1e9v RCSB], [https://www.ebi.ac.uk/pdbsum/1e9v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1e9v ProSAT]</span></td></tr>
-
 
+
</table>
-
'''XENON BOUND IN HYDROPHOBIC CHANNEL OF HYBRID CLUSTER PROTEIN FROM DESULFOVIBRIO VULGARIS'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/HCP_NITV2 HCP_NITV2] Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.[HAMAP-Rule:MF_00069]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
1E9V is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1E9V OCA].
+
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e9/1e9v_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1e9v ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Desulfovibrio vulgaris]]
[[Category: Desulfovibrio vulgaris]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Bailey, S.]]
+
[[Category: Bailey S]]
-
[[Category: Cooper, S J.]]
+
[[Category: Cooper SJ]]
-
[[Category: Lindley, P F.]]
+
[[Category: Lindley PF]]
-
[[Category: Rizkallah, P J.]]
+
[[Category: Rizkallah PJ]]
-
[[Category: ACY]]
+
-
[[Category: EDO]]
+
-
[[Category: FSO]]
+
-
[[Category: GOL]]
+
-
[[Category: SF4]]
+
-
[[Category: TRS]]
+
-
[[Category: XE]]
+
-
[[Category: cubane]]
+
-
[[Category: fuscoredoxin]]
+
-
[[Category: hybrid cluster]]
+
-
[[Category: hydrophobic cavity]]
+
-
[[Category: iron sulfur]]
+
-
[[Category: prismane]]
+
-
[[Category: s-mercaptocysteine]]
+
-
[[Category: thiocysteine]]
+
-
[[Category: xenon]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 10:52:17 2008''
+

Current revision

XENON BOUND IN HYDROPHOBIC CHANNEL OF HYBRID CLUSTER PROTEIN FROM DESULFOVIBRIO VULGARIS

PDB ID 1e9v

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools