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4m1r

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Structure of a novel cellulase 5 from a sugarcane soil metagenomic library

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 ==Structure of a novel cellulase 5 from a sugarcane soil metagenomic library==
-<StructureSection load='4m1r' size='340' side='right' caption='[[4m1r]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+<StructureSection load='4m1r' size='340' side='right'caption='[[4m1r]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4m1r]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Soil_metagenome Soil metagenome]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4M1R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4M1R FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4m1r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Soil_metagenome Soil metagenome]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4M1R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4M1R FirstGlance]. <br>
-</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene><br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4m1r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4m1r OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4m1r RCSB], [http://www.ebi.ac.uk/pdbsum/4m1r PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4m1r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4m1r OCA], [https://pdbe.org/4m1r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4m1r RCSB], [https://www.ebi.ac.uk/pdbsum/4m1r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4m1r ProSAT]</span></td></tr>
-<table>
+</table>
-<div style="background-color:#fffaf0;">
-== Publication Abstract from PubMed ==
-Cellulases play a key role in enzymatic routes for degradation of plant cell-wall polysaccharides into simple and economically-relevant sugars. However, their low performance on complex substrates and reduced stability under industrial conditions remain the main obstacle for the large-scale production of cellulose-derived products and biofuels. Thus, in this study a novel cellulase with unusual catalytic properties from sugarcane soil metagenome (CelE1) was isolated and characterized. The polypeptide deduced from the celE1 gene encodes a unique glycoside hydrolase domain belonging to GH5 family. The recombinant enzyme was active on both carboxymethyl cellulose and beta-glucan with an endo-acting mode according to capillary electrophoretic analysis of cleavage products. CelE1 showed optimum hydrolytic activity at pH 7.0 and 50 degrees C with remarkable activity at alkaline conditions that is attractive for industrial applications in which conventional acidic cellulases are not suitable. Moreover, its three-dimensional structure was determined at 1.8 A resolution that allowed the identification of an insertion of eight residues in the beta8-alpha8 loop of the catalytic domain of CelE1, which is not conserved in its psychrophilic orthologs. This 8-residue-long segment is a prominent and distinguishing feature of thermotolerant cellulases 5 suggesting that it might be involved with thermal stability. Based on its unconventional characteristics, CelE1 could be potentially employed in biotechnological processes that require thermotolerant and alkaline cellulases.
-Structure and function of a novel cellulase 5 from sugarcane soil metagenome.,Alvarez TM, Paiva JH, Ruiz DM, Cairo JP, Pereira IO, Paixao DA, de Almeida RF, Tonoli CC, Ruller R, Santos CR, Squina FM, Murakami MT PLoS One. 2013 Dec 17;8(12):e83635. doi: 10.1371/journal.pone.0083635., eCollection 2013. PMID:24358302<ref>PMID:24358302</ref>
-From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-</div>
-== References ==
-<references/>
 __TOC__
 </StructureSection>
-[[Category: Cellulase]]
+[[Category: Large Structures]]
 [[Category: Soil metagenome]]
-[[Category: Almeida, R A.]]
+[[Category: Almeida RA]]
-[[Category: Alvarez, T M.]]
+[[Category: Alvarez TM]]
-[[Category: Cairo, J P.]]
+[[Category: Cairo JP]]
-[[Category: Murakami, M T.]]
+[[Category: Murakami MT]]
-[[Category: Paiva, J H.]]
+[[Category: Paiva JH]]
-[[Category: Paixao, D A.]]
+[[Category: Paixao DA]]
-[[Category: Ruiz, D M.]]
+[[Category: Ruiz DM]]
-[[Category: Ruller, R.]]
+[[Category: Ruller R]]
-[[Category: Santos, C R.]]
+[[Category: Santos CR]]
-[[Category: Squina, F M.]]
+[[Category: Squina FM]]
-[[Category: Tonoli, C C.C.]]
+[[Category: Tonoli CCC]]
-[[Category: Cellulase]]
-[[Category: Hydrolase]]
-[[Category: Tim barrel]]

4m1r

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Structure of a novel cellulase 5 from a sugarcane soil metagenomic library

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