This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1esi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:06, 7 February 2024) (edit) (undo)
 
(16 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1esi.jpg|left|200px]]
 
-
{{Structure
+
==R248L MUTANT OF STREPTOMYCES K15 DD-TRANSPEPTIDASE==
-
|PDB= 1esi |SIZE=350|CAPTION= <scene name='initialview01'>1esi</scene>, resolution 1.80&Aring;
+
<StructureSection load='1esi' size='340' side='right'caption='[[1esi]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[1esi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_sp._K15 Streptomyces sp. K15]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ESI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ESI FirstGlance]. <br>
-
|ACTIVITY= [http://en.wikipedia.org/wiki/Serine-type_D-Ala-D-Ala_carboxypeptidase Serine-type D-Ala-D-Ala carboxypeptidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.16.4 3.4.16.4]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
|GENE=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1esi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1esi OCA], [https://pdbe.org/1esi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1esi RCSB], [https://www.ebi.ac.uk/pdbsum/1esi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1esi ProSAT]</span></td></tr>
-
}}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DACX_STRSK DACX_STRSK] Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/es/1esi_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1esi ConSurf].
 +
<div style="clear:both"></div>
-
'''R248L MUTANT OF STREPTOMYCES K15 DD-TRANSPEPTIDASE'''
+
==See Also==
-
 
+
*[[Carboxypeptidase 3D structures|Carboxypeptidase 3D structures]]
-
 
+
*[[Penicillin-binding protein 3D structures|Penicillin-binding protein 3D structures]]
-
==About this Structure==
+
__TOC__
-
1ESI is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Streptomyces_sp. Streptomyces sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ESI OCA].
+
</StructureSection>
-
[[Category: Serine-type D-Ala-D-Ala carboxypeptidase]]
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Streptomyces sp. K15]]
-
[[Category: Streptomyces sp.]]
+
[[Category: Charlier P]]
-
[[Category: Charlier, P.]]
+
[[Category: Fonze E]]
-
[[Category: Fonze, E.]]
+
-
[[Category: beta-lactamase]]
+
-
[[Category: dd-transpeptidase]]
+
-
[[Category: hydrolase carboxypeptidase]]
+
-
[[Category: penicillin-binding]]
+
-
[[Category: serine peptidase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 10:59:44 2008''
+

Current revision

R248L MUTANT OF STREPTOMYCES K15 DD-TRANSPEPTIDASE

PDB ID 1esi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools