1eyx

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:43, 12 March 2025) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
 +
==CRYSTAL STRUCTURE OF R-PHYCOERYTHRIN AT 2.2 ANGSTROMS==
==CRYSTAL STRUCTURE OF R-PHYCOERYTHRIN AT 2.2 ANGSTROMS==
-
<StructureSection load='1eyx' size='340' side='right' caption='[[1eyx]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
+
<StructureSection load='1eyx' size='340' side='right'caption='[[1eyx]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1eyx]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Gracilaria_chilensis Gracilaria chilensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EYX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1EYX FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1eyx]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Agarophyton_chilense Agarophyton chilense]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EYX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EYX FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BLA:BILIVERDINE+IX+ALPHA'>BLA</scene>, <scene name='pdbligand=CYC:PHYCOCYANOBILIN'>CYC</scene>, <scene name='pdbligand=PUB:PHYCOUROBILIN'>PUB</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MEN:N-METHYL+ASPARAGINE'>MEN</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CYC:PHYCOCYANOBILIN'>CYC</scene>, <scene name='pdbligand=MEN:N-METHYL+ASPARAGINE'>MEN</scene>, <scene name='pdbligand=PUB:PHYCOUROBILIN'>PUB</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1eyx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1eyx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1eyx RCSB], [http://www.ebi.ac.uk/pdbsum/1eyx PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1eyx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1eyx OCA], [https://pdbe.org/1eyx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1eyx RCSB], [https://www.ebi.ac.uk/pdbsum/1eyx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1eyx ProSAT]</span></td></tr>
-
<table>
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PHEA_AGACH PHEA_AGACH]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ey/1eyx_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ey/1eyx_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1eyx ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 25: Line 28:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 1eyx" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Gracilaria chilensis]]
+
[[Category: Agarophyton chilense]]
-
[[Category: Bunster, M.]]
+
[[Category: Large Structures]]
-
[[Category: Contreras-Martel, C.]]
+
[[Category: Bunster M]]
-
[[Category: Fontecilla-Camps, J C.]]
+
[[Category: Contreras-Martel C]]
-
[[Category: Legrand, P.]]
+
[[Category: Fontecilla-Camps JC]]
-
[[Category: Martinez-Oyanedel, J.]]
+
[[Category: Legrand P]]
-
[[Category: Piras, C.]]
+
[[Category: Martinez-Oyanedel J]]
-
[[Category: Vernede, X.]]
+
[[Category: Piras C]]
-
[[Category: Macroseeding]]
+
[[Category: Vernede X]]
-
[[Category: Photosynthesis]]
+
-
[[Category: Phycobiliprotein]]
+
-
[[Category: Protein structure]]
+
-
[[Category: R-phycoerythrin]]
+
-
[[Category: Red algae]]
+
-
[[Category: Sequence]]
+
-
[[Category: Twin]]
+

Current revision

CRYSTAL STRUCTURE OF R-PHYCOERYTHRIN AT 2.2 ANGSTROMS

PDB ID 1eyx

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools