1lm6
From Proteopedia
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==Crystal Structure of Peptide Deformylase from Streptococcus pneumoniae== | ==Crystal Structure of Peptide Deformylase from Streptococcus pneumoniae== | ||
| - | <StructureSection load='1lm6' size='340' side='right' caption='[[1lm6]], [[Resolution|resolution]] 1.75Å' scene=''> | + | <StructureSection load='1lm6' size='340' side='right'caption='[[1lm6]], [[Resolution|resolution]] 1.75Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[1lm6]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[1lm6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LM6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LM6 FirstGlance]. <br> |
| - | </td></tr><tr><td class="sblockLbl"><b>[[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75Å</td></tr> |
| - | <tr><td class="sblockLbl"><b>[[ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=OCS:CYSTEINESULFONIC+ACID'>OCS</scene></td></tr> |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1lm6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1lm6 OCA], [https://pdbe.org/1lm6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1lm6 RCSB], [https://www.ebi.ac.uk/pdbsum/1lm6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1lm6 ProSAT]</span></td></tr> | |
| - | + | </table> | |
| - | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | == Function == |
| - | <table> | + | [https://www.uniprot.org/uniprot/DEF_STRPN DEF_STRPN] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (By similarity). |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lm/1lm6_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lm/1lm6_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1lm6 ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 1lm6" style="background-color:#fffaf0;"></div> | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Large Structures]] |
[[Category: Streptococcus pneumoniae]] | [[Category: Streptococcus pneumoniae]] | ||
| - | [[Category: Ericson | + | [[Category: Ericson C]] |
| - | [[Category: Klock | + | [[Category: Klock H]] |
| - | [[Category: Kreusch | + | [[Category: Kreusch A]] |
| - | [[Category: Lee | + | [[Category: Lee CC]] |
| - | [[Category: Lesley | + | [[Category: Lesley SA]] |
| - | [[Category: McMullan | + | [[Category: McMullan D]] |
| - | [[Category: Ng | + | [[Category: Ng K]] |
| - | [[Category: Shin | + | [[Category: Shin T]] |
| - | [[Category: Spraggon | + | [[Category: Spraggon G]] |
| - | [[Category: Vincent | + | [[Category: Vincent J]] |
| - | [[Category: Warner | + | [[Category: Warner I]] |
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Current revision
Crystal Structure of Peptide Deformylase from Streptococcus pneumoniae
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Categories: Large Structures | Streptococcus pneumoniae | Ericson C | Klock H | Kreusch A | Lee CC | Lesley SA | McMullan D | Ng K | Shin T | Spraggon G | Vincent J | Warner I
