1ups
From Proteopedia
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| - | == | + | |
| - | <StructureSection load='1ups' size='340' side='right' caption='[[1ups]], [[Resolution|resolution]] 1.82Å' scene=''> | + | ==GlcNAc[alpha]1-4Gal releasing endo-[beta]-galactosidase from Clostridium perfringens== |
| + | <StructureSection load='1ups' size='340' side='right'caption='[[1ups]], [[Resolution|resolution]] 1.82Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[1ups]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[1ups]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_perfringens Clostridium perfringens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UPS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UPS FirstGlance]. <br> |
| - | </td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>< | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.82Å</td></tr> |
| - | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> |
| - | <table> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ups FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ups OCA], [https://pdbe.org/1ups PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ups RCSB], [https://www.ebi.ac.uk/pdbsum/1ups PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ups ProSAT], [https://www.topsan.org/Proteins/SECSG/1ups TOPSAN]</span></td></tr> |
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q934G8_CLOPF Q934G8_CLOPF] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/up/1ups_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/up/1ups_consurf.spt"</scriptWhenChecked> |
| - | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/ | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> |
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ups ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
==See Also== | ==See Also== | ||
| - | *[[Galactosidase|Galactosidase]] | + | *[[Galactosidase 3D structures|Galactosidase 3D structures]] |
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Clostridium perfringens]] | [[Category: Clostridium perfringens]] | ||
| - | [[Category: Ashida | + | [[Category: Large Structures]] |
| - | [[Category: Deng | + | [[Category: Ashida H]] |
| - | [[Category: Horanyi | + | [[Category: Deng L]] |
| - | [[Category: Lee | + | [[Category: Horanyi PS]] |
| - | [[Category: Li | + | [[Category: Lee D]] |
| - | [[Category: Li | + | [[Category: Li S-C]] |
| - | [[Category: Liu | + | [[Category: Li Y-T]] |
| - | [[Category: Newton | + | [[Category: Liu Z-J]] |
| - | [[Category: Rose | + | [[Category: Newton MG]] |
| - | + | [[Category: Rose JP]] | |
| - | [[Category: Tempel | + | [[Category: Tempel W]] |
| - | [[Category: Wang | + | [[Category: Wang B-C]] |
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Current revision
GlcNAc[alpha]1-4Gal releasing endo-[beta]-galactosidase from Clostridium perfringens
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Categories: Clostridium perfringens | Large Structures | Ashida H | Deng L | Horanyi PS | Lee D | Li S-C | Li Y-T | Liu Z-J | Newton MG | Rose JP | Tempel W | Wang B-C
