This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1pwz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:49, 16 August 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of the haloalcohol dehalogenase HheC complexed with (R)-styrene oxide and chloride==
==Crystal structure of the haloalcohol dehalogenase HheC complexed with (R)-styrene oxide and chloride==
-
<StructureSection load='1pwz' size='340' side='right' caption='[[1pwz]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
+
<StructureSection load='1pwz' size='340' side='right'caption='[[1pwz]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1pwz]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PWZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1PWZ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1pwz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PWZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PWZ FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=RSO:R-STYRENE+OXIDE'>RSO</scene><br>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1pwx|1pwx]], [[1px0|1px0]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=RSO:R-STYRENE+OXIDE'>RSO</scene></td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pwz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pwz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1pwz RCSB], [http://www.ebi.ac.uk/pdbsum/1pwz PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pwz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pwz OCA], [https://pdbe.org/1pwz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pwz RCSB], [https://www.ebi.ac.uk/pdbsum/1pwz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pwz ProSAT]</span></td></tr>
-
<table>
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q93D82_RHIRD Q93D82_RHIRD]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pw/1pwz_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pw/1pwz_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pwz ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 25: Line 28:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 1pwz" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Dehalogenase 3D structures|Dehalogenase 3D structures]]
== References ==
== References ==
<references/>
<references/>
Line 30: Line 37:
</StructureSection>
</StructureSection>
[[Category: Agrobacterium tumefaciens]]
[[Category: Agrobacterium tumefaciens]]
-
[[Category: Dijkstra, B W.]]
+
[[Category: Large Structures]]
-
[[Category: Janssen, D B.]]
+
[[Category: Dijkstra BW]]
-
[[Category: Jong, R M.de.]]
+
[[Category: Janssen DB]]
-
[[Category: Kalk, K H.]]
+
[[Category: Kalk KH]]
-
[[Category: Rozeboom, H J.]]
+
[[Category: Rozeboom HJ]]
-
[[Category: Tang, L.]]
+
[[Category: Tang L]]
-
[[Category: Tiesinga, J J.W.]]
+
[[Category: Tiesinga JJW]]
-
[[Category: Haloalcohol dehalogenase]]
+
[[Category: De Jong RM]]
-
[[Category: Halohydrin dehalogenase]]
+
-
[[Category: Halohydrin hydrogen-halide lyase]]
+
-
[[Category: Lyase]]
+
-
[[Category: Rossmann fold]]
+
-
[[Category: Sdr family]]
+
-
[[Category: Short-chain dehydrogenase/reductase]]
+

Current revision

Crystal structure of the haloalcohol dehalogenase HheC complexed with (R)-styrene oxide and chloride

PDB ID 1pwz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools