2dge

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==Crystal structure of oxidized cytochrome C6A from Arabidopsis thaliana==
==Crystal structure of oxidized cytochrome C6A from Arabidopsis thaliana==
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<StructureSection load='2dge' size='340' side='right' caption='[[2dge]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
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<StructureSection load='2dge' size='340' side='right'caption='[[2dge]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[2dge]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DGE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DGE FirstGlance]. <br>
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<table><tr><td colspan='2'>[[2dge]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DGE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DGE FirstGlance]. <br>
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</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
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<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ATC6 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dge FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dge OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dge RCSB], [http://www.ebi.ac.uk/pdbsum/2dge PDBsum]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dge FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dge OCA], [https://pdbe.org/2dge PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dge RCSB], [https://www.ebi.ac.uk/pdbsum/2dge PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dge ProSAT]</span></td></tr>
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<table>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CYC6_ARATH CYC6_ARATH] Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dg/2dge_consurf.spt"</scriptWhenChecked>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dg/2dge_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dge ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
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<div class="pdbe-citations 2dge" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
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*[[Cytochrome c|Cytochrome c]]
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*[[Cytochrome f 3D structures|Cytochrome f 3D structures]]
== References ==
== References ==
<references/>
<references/>
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</StructureSection>
</StructureSection>
[[Category: Arabidopsis thaliana]]
[[Category: Arabidopsis thaliana]]
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[[Category: Akazaki, H.]]
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[[Category: Large Structures]]
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[[Category: Chida, H.]]
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[[Category: Akazaki H]]
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[[Category: Hirano, T.]]
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[[Category: Chida H]]
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[[Category: Kawachi, R.]]
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[[Category: Hirano T]]
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[[Category: Kawai, F.]]
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[[Category: Kawachi R]]
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[[Category: Nakazawa, A.]]
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[[Category: Kawai F]]
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[[Category: Nishio, T.]]
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[[Category: Nakazawa A]]
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[[Category: Oku, T.]]
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[[Category: Nishio T]]
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[[Category: Park, S Y.]]
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[[Category: Oku T]]
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[[Category: Satoh, T.]]
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[[Category: Park S-Y]]
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[[Category: Suruga, K.]]
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[[Category: Satoh T]]
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[[Category: Takayama, Y.]]
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[[Category: Suruga K]]
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[[Category: Unzai, S.]]
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[[Category: Takayama Y]]
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[[Category: Yamada, S.]]
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[[Category: Unzai S]]
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[[Category: Yokoyama, T.]]
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[[Category: Yamada S]]
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[[Category: Arabidopsis thaliana]]
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[[Category: Yokoyama T]]
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[[Category: Cytochrome c6a]]
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[[Category: Electron transfer]]
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[[Category: Electron transport]]
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[[Category: Heme exposure]]
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Current revision

Crystal structure of oxidized cytochrome C6A from Arabidopsis thaliana

PDB ID 2dge

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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