This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2w1x

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:01, 19 November 2020) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
==THE INTERDEPENDENCE OF WAVELENGTH, REDUNDANCY AND DOSE IN SULFUR SAD EXPERIMENTS: 1.284 A WAVELENGTH 360 IMAGES DATA==
+
 
-
<StructureSection load='2w1x' size='340' side='right' caption='[[2w1x]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
+
==The interdependence of wavelength, redundancy and dose in sulfur SAD experiments: 1.284 A wavelength 360 images data==
 +
<StructureSection load='2w1x' size='340' side='right'caption='[[2w1x]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2w1x]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W1X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2W1X FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2w1x]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W1X OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2W1X FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene><br>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1w6z|1w6z]], [[1kxx|1kxx]], [[4lyo|4lyo]], [[3lyo|3lyo]], [[1kip|1kip]], [[1t6v|1t6v]], [[1ic7|1ic7]], [[1vds|1vds]], [[1lzt|1lzt]], [[1kir|1kir]], [[1lys|1lys]], [[1e8l|1e8l]], [[1bwj|1bwj]], [[132l|132l]], [[1yil|1yil]], [[1heo|1heo]], [[1sfg|1sfg]], [[1kxw|1kxw]], [[2c8o|2c8o]], [[1yl1|1yl1]], [[1sf4|1sf4]], [[1g7l|1g7l]], [[1ior|1ior]], [[1h87|1h87]], [[1ljg|1ljg]], [[3lyt|3lyt]], [[1iot|1iot]], [[1dpx|1dpx]], [[1v7s|1v7s]], [[1ja6|1ja6]], [[1jis|1jis]], [[1ir8|1ir8]], [[2w1m|2w1m]], [[1uic|1uic]], [[1ykz|1ykz]], [[1xgq|1xgq]], [[1uie|1uie]], [[1lji|1lji]], [[1lj3|1lj3]], [[8lyz|8lyz]], [[1dpw|1dpw]], [[1bwi|1bwi]], [[2iff|2iff]], [[2lyo|2lyo]], [[1g7h|1g7h]], [[1jj0|1jj0]], [[1lks|1lks]], [[1rfp|1rfp]], [[5lyt|5lyt]], [[1sfb|1sfb]], [[1jiy|1jiy]], [[1ir7|1ir7]], [[1iee|1iee]], [[1xei|1xei]], [[1xek|1xek]], [[1hel|1hel]], [[1at6|1at6]], [[1ljf|1ljf]], [[1mlc|1mlc]], [[1f10|1f10]], [[2b5z|2b5z]], [[1lsz|1lsz]], [[193l|193l]], [[1ljk|1ljk]], [[1sq2|1sq2]], [[6lyt|6lyt]], [[1vdq|1vdq]], [[1zmy|1zmy]], [[1lje|1lje]], [[2d91|2d91]], [[1b2k|1b2k]], [[1lze|1lze]], [[1aki|1aki]], [[1uia|1uia]], [[1hen|1hen]], [[1yik|1yik]], [[1xfp|1xfp]], [[2d6b|2d6b]], [[1lpi|1lpi]], [[1ndg|1ndg]], [[1lsd|1lsd]], [[1flw|1flw]], [[2blx|2blx]], [[6lyz|6lyz]], [[1lsg|1lsg]], [[1nbz|1nbz]], [[4lyt|4lyt]], [[3hfm|3hfm]], [[1ved|1ved]], [[1jit|1jit]], [[1lzn|1lzn]], [[1wtn|1wtn]], [[1uuz|1uuz]], [[1lyz|1lyz]], [[1ja2|1ja2]], [[2d4i|2d4i]], [[2fbb|2fbb]], [[2lym|2lym]], [[1fdl|1fdl]], [[1lz9|1lz9]], [[1lse|1lse]], [[1lzh|1lzh]], [[1gxx|1gxx]], [[1lsm|1lsm]], [[1jj3|1jj3]], [[3lym|3lym]], [[7lyz|7lyz]], [[1yky|1yky]], [[1heq|1heq]], [[1kiq|1kiq]], [[1t3p|1t3p]], [[1uih|1uih]], [[1kxy|1kxy]], [[2lzh|2lzh]], [[2w1l|2w1l]], [[1g7j|1g7j]], [[1b0d|1b0d]], [[2bly|2bly]], [[1bhz|1bhz]], [[1her|1her]], [[1wtm|1wtm]], [[1hep|1hep]], [[1ioq|1ioq]], [[1nby|1nby]], [[1jtt|1jtt]], [[1qio|1qio]], [[1lza|1lza]], [[1ps5|1ps5]], [[1xgp|1xgp]], [[1gwd|1gwd]], [[1jpo|1jpo]], [[1v7t|1v7t]], [[1h6m|1h6m]], [[2a7d|2a7d]], [[1j1p|1j1p]], [[1dqj|1dqj]], [[2c8p|2c8p]], [[1z55|1z55]], [[1ljj|1ljj]], [[1lsb|1lsb]], [[1f0w|1f0w]], [[1flq|1flq]], [[1lzg|1lzg]], [[1lzc|1lzc]], [[1jj1|1jj1]], [[1rcm|1rcm]], [[1yqv|1yqv]], [[1uid|1uid]], [[1hsx|1hsx]], [[1bgi|1bgi]], [[1lzd|1lzd]], [[1lcn|1lcn]], [[1hew|1hew]], [[2cds|2cds]], [[2vb1|2vb1]], [[2aub|2aub]], [[1uib|1uib]], [[1hf4|1hf4]], [[1j1x|1j1x]], [[1ir9|1ir9]], [[1rjc|1rjc]], [[1ios|1ios]], [[2cgi|2cgi]], [[1uc0|1uc0]], [[1azf|1azf]], [[1ljh|1ljh]], [[1ic4|1ic4]], [[4lyz|4lyz]], [[1gpq|1gpq]], [[2a6u|2a6u]], [[2d4k|2d4k]], [[1xej|1xej]], [[1ja7|1ja7]], [[1mel|1mel]], [[1ri8|1ri8]], [[1uig|1uig]], [[1bvx|1bvx]], [[1qtk|1qtk]], [[1c10|1c10]], [[1lkr|1lkr]], [[1lyo|1lyo]], [[1n4f|1n4f]], [[1hsw|1hsw]], [[1g7m|1g7m]], [[1jto|1jto]], [[2w1y|2w1y]], [[1sf7|1sf7]], [[1lsf|1lsf]], [[1fn5|1fn5]], [[5lyz|5lyz]], [[2d4j|2d4j]], [[3lzt|3lzt]], [[1c08|1c08]], [[1ndm|1ndm]], [[1sf6|1sf6]], [[3lyz|3lyz]], [[1bvk|1bvk]], [[1uif|1uif]], [[1vau|1vau]], [[2lyz|2lyz]], [[1fly|1fly]], [[1lma|1lma]], [[1j1o|1j1o]], [[1hc0|1hc0]], [[1yl0|1yl0]], [[2lzt|2lzt]], [[4lzt|4lzt]], [[1a2y|1a2y]], [[1uco|1uco]], [[1lsy|1lsy]], [[1p2c|1p2c]], [[1ic5|1ic5]], [[1gxv|1gxv]], [[5lym|5lym]], [[1lsa|1lsa]], [[1ua6|1ua6]], [[1at5|1at5]], [[1hem|1hem]], [[1lj4|1lj4]], [[1vfb|1vfb]], [[1f3j|1f3j]], [[1vat|1vat]], [[1ja4|1ja4]], [[2a7f|2a7f]], [[4lym|4lym]], [[1flu|1flu]], [[194l|194l]], [[1lz8|1lz8]], [[1ykx|1ykx]], [[2hfm|2hfm]], [[1vdt|1vdt]], [[1bwh|1bwh]], [[1io5|1io5]], [[1lsn|1lsn]], [[1g7i|1g7i]], [[1lzb|1lzb]], [[2bpu|2bpu]], [[1lsc|1lsc]], [[1vdp|1vdp]]</td></tr>
+
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1w6z|1w6z]], [[1kxx|1kxx]], [[4lyo|4lyo]], [[3lyo|3lyo]], [[1kip|1kip]], [[1t6v|1t6v]], [[1ic7|1ic7]], [[1vds|1vds]], [[1lzt|1lzt]], [[1kir|1kir]], [[1lys|1lys]], [[1e8l|1e8l]], [[1bwj|1bwj]], [[132l|132l]], [[1yil|1yil]], [[1heo|1heo]], [[1sfg|1sfg]], [[1kxw|1kxw]], [[2c8o|2c8o]], [[1yl1|1yl1]], [[1sf4|1sf4]], [[1g7l|1g7l]], [[1ior|1ior]], [[1h87|1h87]], [[1ljg|1ljg]], [[3lyt|3lyt]], [[1iot|1iot]], [[1dpx|1dpx]], [[1v7s|1v7s]], [[1ja6|1ja6]], [[1jis|1jis]], [[1ir8|1ir8]], [[2w1m|2w1m]], [[1uic|1uic]], [[1ykz|1ykz]], [[1xgq|1xgq]], [[1uie|1uie]], [[1lji|1lji]], [[1lj3|1lj3]], [[8lyz|8lyz]], [[1dpw|1dpw]], [[1bwi|1bwi]], [[2iff|2iff]], [[2lyo|2lyo]], [[1g7h|1g7h]], [[1jj0|1jj0]], [[1lks|1lks]], [[1rfp|1rfp]], [[5lyt|5lyt]], [[1sfb|1sfb]], [[1jiy|1jiy]], [[1ir7|1ir7]], [[1iee|1iee]], [[1xei|1xei]], [[1xek|1xek]], [[1hel|1hel]], [[1at6|1at6]], [[1ljf|1ljf]], [[1mlc|1mlc]], [[1f10|1f10]], [[2b5z|2b5z]], [[1lsz|1lsz]], [[193l|193l]], [[1ljk|1ljk]], [[1sq2|1sq2]], [[6lyt|6lyt]], [[1vdq|1vdq]], [[1zmy|1zmy]], [[1lje|1lje]], [[2d91|2d91]], [[1b2k|1b2k]], [[1lze|1lze]], [[1aki|1aki]], [[1uia|1uia]], [[1hen|1hen]], [[1yik|1yik]], [[1xfp|1xfp]], [[2d6b|2d6b]], [[1lpi|1lpi]], [[1ndg|1ndg]], [[1lsd|1lsd]], [[1flw|1flw]], [[2blx|2blx]], [[6lyz|6lyz]], [[1lsg|1lsg]], [[1nbz|1nbz]], [[4lyt|4lyt]], [[3hfm|3hfm]], [[1ved|1ved]], [[1jit|1jit]], [[1lzn|1lzn]], [[1wtn|1wtn]], [[1uuz|1uuz]], [[1lyz|1lyz]], [[1ja2|1ja2]], [[2d4i|2d4i]], [[2fbb|2fbb]], [[2lym|2lym]], [[1fdl|1fdl]], [[1lz9|1lz9]], [[1lse|1lse]], [[1lzh|1lzh]], [[1gxx|1gxx]], [[1lsm|1lsm]], [[1jj3|1jj3]], [[3lym|3lym]], [[7lyz|7lyz]], [[1yky|1yky]], [[1heq|1heq]], [[1kiq|1kiq]], [[1t3p|1t3p]], [[1uih|1uih]], [[1kxy|1kxy]], [[2lzh|2lzh]], [[2w1l|2w1l]], [[1g7j|1g7j]], [[1b0d|1b0d]], [[2bly|2bly]], [[1bhz|1bhz]], [[1her|1her]], [[1wtm|1wtm]], [[1hep|1hep]], [[1ioq|1ioq]], [[1nby|1nby]], [[1jtt|1jtt]], [[1qio|1qio]], [[1lza|1lza]], [[1ps5|1ps5]], [[1xgp|1xgp]], [[1gwd|1gwd]], [[1jpo|1jpo]], [[1v7t|1v7t]], [[1h6m|1h6m]], [[2a7d|2a7d]], [[1j1p|1j1p]], [[1dqj|1dqj]], [[2c8p|2c8p]], [[1z55|1z55]], [[1ljj|1ljj]], [[1lsb|1lsb]], [[1f0w|1f0w]], [[1flq|1flq]], [[1lzg|1lzg]], [[1lzc|1lzc]], [[1jj1|1jj1]], [[1rcm|1rcm]], [[1yqv|1yqv]], [[1uid|1uid]], [[1hsx|1hsx]], [[1bgi|1bgi]], [[1lzd|1lzd]], [[1lcn|1lcn]], [[1hew|1hew]], [[2cds|2cds]], [[2vb1|2vb1]], [[2aub|2aub]], [[1uib|1uib]], [[1hf4|1hf4]], [[1j1x|1j1x]], [[1ir9|1ir9]], [[1rjc|1rjc]], [[1ios|1ios]], [[2cgi|2cgi]], [[1uc0|1uc0]], [[1azf|1azf]], [[1ljh|1ljh]], [[1ic4|1ic4]], [[4lyz|4lyz]], [[1gpq|1gpq]], [[2a6u|2a6u]], [[2d4k|2d4k]], [[1xej|1xej]], [[1ja7|1ja7]], [[1mel|1mel]], [[1ri8|1ri8]], [[1uig|1uig]], [[1bvx|1bvx]], [[1qtk|1qtk]], [[1c10|1c10]], [[1lkr|1lkr]], [[1lyo|1lyo]], [[1n4f|1n4f]], [[1hsw|1hsw]], [[1g7m|1g7m]], [[1jto|1jto]], [[2w1y|2w1y]], [[1sf7|1sf7]], [[1lsf|1lsf]], [[1fn5|1fn5]], [[5lyz|5lyz]], [[2d4j|2d4j]], [[3lzt|3lzt]], [[1c08|1c08]], [[1ndm|1ndm]], [[1sf6|1sf6]], [[3lyz|3lyz]], [[1bvk|1bvk]], [[1uif|1uif]], [[1vau|1vau]], [[2lyz|2lyz]], [[1fly|1fly]], [[1lma|1lma]], [[1j1o|1j1o]], [[1hc0|1hc0]], [[1yl0|1yl0]], [[2lzt|2lzt]], [[4lzt|4lzt]], [[1a2y|1a2y]], [[1uco|1uco]], [[1lsy|1lsy]], [[1p2c|1p2c]], [[1ic5|1ic5]], [[1gxv|1gxv]], [[5lym|5lym]], [[1lsa|1lsa]], [[1ua6|1ua6]], [[1at5|1at5]], [[1hem|1hem]], [[1lj4|1lj4]], [[1vfb|1vfb]], [[1f3j|1f3j]], [[1vat|1vat]], [[1ja4|1ja4]], [[2a7f|2a7f]], [[4lym|4lym]], [[1flu|1flu]], [[194l|194l]], [[1lz8|1lz8]], [[1ykx|1ykx]], [[2hfm|2hfm]], [[1vdt|1vdt]], [[1bwh|1bwh]], [[1io5|1io5]], [[1lsn|1lsn]], [[1g7i|1g7i]], [[1lzb|1lzb]], [[2bpu|2bpu]], [[1lsc|1lsc]], [[1vdp|1vdp]]</div></td></tr>
-
<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
+
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2w1x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w1x OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2w1x RCSB], [http://www.ebi.ac.uk/pdbsum/2w1x PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2w1x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w1x OCA], [http://pdbe.org/2w1x PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2w1x RCSB], [http://www.ebi.ac.uk/pdbsum/2w1x PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2w1x ProSAT]</span></td></tr>
-
<table>
+
</table>
 +
== Function ==
 +
[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w1/2w1x_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w1/2w1x_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2w1x ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 26: Line 29:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 2w1x" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
Line 34: Line 38:
</StructureSection>
</StructureSection>
[[Category: Gallus gallus]]
[[Category: Gallus gallus]]
 +
[[Category: Large Structures]]
[[Category: Lysozyme]]
[[Category: Lysozyme]]
-
[[Category: Cianci, M.]]
+
[[Category: Cianci, M]]
-
[[Category: Helliwell, J R.]]
+
[[Category: Helliwell, J R]]
-
[[Category: Suzuki, A.]]
+
[[Category: Suzuki, A]]
[[Category: Detector- tilt geometry]]
[[Category: Detector- tilt geometry]]
[[Category: Dose]]
[[Category: Dose]]

Current revision

The interdependence of wavelength, redundancy and dose in sulfur SAD experiments: 1.284 A wavelength 360 images data

PDB ID 2w1x

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools