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2vs7
From Proteopedia
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| - | == | + | |
| - | <StructureSection load='2vs7' size='340' side='right' caption='[[2vs7]], [[Resolution|resolution]] 2.05Å' scene=''> | + | ==The crystal structure of I-DmoI in complex with DNA and Ca== |
| + | <StructureSection load='2vs7' size='340' side='right'caption='[[2vs7]], [[Resolution|resolution]] 2.05Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2vs7]] is a 9 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2vs7]] is a 9 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfurococcus_mucosus Desulfurococcus mucosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VS7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VS7 FirstGlance]. <br> |
| - | </td></tr><tr><td class="sblockLbl"><b>[[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05Å</td></tr> |
| - | <tr><td class="sblockLbl"><b>[[ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> |
| - | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vs7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vs7 OCA], [https://pdbe.org/2vs7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vs7 RCSB], [https://www.ebi.ac.uk/pdbsum/2vs7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vs7 ProSAT]</span></td></tr> |
| - | <table> | + | </table> |
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/DMO1_DESMO DMO1_DESMO] Endonuclease involved in intron homing. Recognizes a recognizes up to 20 bp of DNA in the 23S rRNA gene intron. It has a slow turnover rate and cuts the coding strand with a slight preference over the non-coding strand. | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vs/2vs7_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vs/2vs7_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vs7 ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 2vs7" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
| - | *[[Endonuclease|Endonuclease]] | + | *[[Endonuclease 3D structures|Endonuclease 3D structures]] |
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Desulfurococcus | + | [[Category: Desulfurococcus mucosus]] |
| - | [[Category: Alibes | + | [[Category: Large Structures]] |
| - | [[Category: Blanco | + | [[Category: Alibes A]] |
| - | [[Category: Duchateau | + | [[Category: Blanco FJ]] |
| - | [[Category: Grizot | + | [[Category: Duchateau P]] |
| - | [[Category: Marcaida | + | [[Category: Grizot S]] |
| - | [[Category: Montoya | + | [[Category: Marcaida MJ]] |
| - | [[Category: Nadra | + | [[Category: Montoya G]] |
| - | [[Category: Paques | + | [[Category: Nadra AD]] |
| - | [[Category: Prieto | + | [[Category: Paques F]] |
| - | [[Category: Redondo | + | [[Category: Prieto J]] |
| - | [[Category: Serrano | + | [[Category: Redondo P]] |
| - | + | [[Category: Serrano L]] | |
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Current revision
The crystal structure of I-DmoI in complex with DNA and Ca
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Categories: Desulfurococcus mucosus | Large Structures | Alibes A | Blanco FJ | Duchateau P | Grizot S | Marcaida MJ | Montoya G | Nadra AD | Paques F | Prieto J | Redondo P | Serrano L
