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2va6
From Proteopedia
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| - | ==X- | + | |
| - | <StructureSection load='2va6' size='340' side='right' caption='[[2va6]], [[Resolution|resolution]] 2.50Å' scene=''> | + | ==X-ray crystal structure of beta secretase complexed with compound 24== |
| + | <StructureSection load='2va6' size='340' side='right'caption='[[2va6]], [[Resolution|resolution]] 2.50Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2va6]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2va6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VA6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VA6 FirstGlance]. <br> |
| - | </td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=H24:(6S)-2-AMINO-6-(3-METHOXYBIPHENYL-3-YL)-3,6-DIMETHYL-5,6-DIHYDROPYRIMIDIN-4(3H)-ONE'>H24</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=H24:(6S)-2-AMINO-6-(3-METHOXYBIPHENYL-3-YL)-3,6-DIMETHYL-5,6-DIHYDROPYRIMIDIN-4(3H)-ONE'>H24</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr> | |
| - | <tr | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2va6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2va6 OCA], [https://pdbe.org/2va6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2va6 RCSB], [https://www.ebi.ac.uk/pdbsum/2va6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2va6 ProSAT]</span></td></tr> |
| - | + | </table> | |
| - | <table> | + | == Function == |
| + | [https://www.uniprot.org/uniprot/BACE1_HUMAN BACE1_HUMAN] Responsible for the proteolytic processing of the amyloid precursor protein (APP). Cleaves at the N-terminus of the A-beta peptide sequence, between residues 671 and 672 of APP, leads to the generation and extracellular release of beta-cleaved soluble APP, and a corresponding cell-associated C-terminal fragment which is later released by gamma-secretase.<ref>PMID:10677483</ref> <ref>PMID:20354142</ref> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/va/2va6_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/va/2va6_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2va6 ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 2va6" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
| - | *[[Beta secretase|Beta secretase]] | + | *[[Beta secretase 3D structures|Beta secretase 3D structures]] |
== References == | == References == | ||
<references/> | <references/> | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Homo sapiens]] | [[Category: Homo sapiens]] | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Aharony | + | [[Category: Aharony D]] |
| - | [[Category: Albert | + | [[Category: Albert JS]] |
| - | [[Category: Andisik | + | [[Category: Andisik D]] |
| - | [[Category: Callaghan | + | [[Category: Callaghan O]] |
| - | [[Category: Campbell | + | [[Category: Campbell JB]] |
| - | [[Category: Carr | + | [[Category: Carr RA]] |
| - | [[Category: Chessari | + | [[Category: Chessari G]] |
| - | [[Category: Congreve | + | [[Category: Congreve M]] |
| - | [[Category: Edwards | + | [[Category: Edwards PD]] |
| - | [[Category: Folmer | + | [[Category: Folmer RHA]] |
| - | [[Category: Frederickson | + | [[Category: Frederickson M]] |
| - | [[Category: Geschwindner | + | [[Category: Geschwindner S]] |
| - | [[Category: Koether | + | [[Category: Koether G]] |
| - | [[Category: Kolmodin | + | [[Category: Kolmodin K]] |
| - | [[Category: Krumrine | + | [[Category: Krumrine J]] |
| - | [[Category: Mauger | + | [[Category: Mauger RC]] |
| - | [[Category: Murray | + | [[Category: Murray CW]] |
| - | [[Category: Olsson | + | [[Category: Olsson LL]] |
| - | [[Category: Patel | + | [[Category: Patel S]] |
| - | [[Category: Spear | + | [[Category: Spear N]] |
| - | [[Category: Sylvester | + | [[Category: Sylvester M]] |
| - | [[Category: Tian | + | [[Category: Tian G]] |
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Current revision
X-ray crystal structure of beta secretase complexed with compound 24
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Categories: Homo sapiens | Large Structures | Aharony D | Albert JS | Andisik D | Callaghan O | Campbell JB | Carr RA | Chessari G | Congreve M | Edwards PD | Folmer RHA | Frederickson M | Geschwindner S | Koether G | Kolmodin K | Krumrine J | Mauger RC | Murray CW | Olsson LL | Patel S | Spear N | Sylvester M | Tian G
