This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2zm6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:43, 1 November 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of the Thermus thermophilus 30S ribosomal subunit==
==Crystal structure of the Thermus thermophilus 30S ribosomal subunit==
-
<StructureSection load='2zm6' size='340' side='right' caption='[[2zm6]], [[Resolution|resolution]] 3.30&Aring;' scene=''>
+
<StructureSection load='2zm6' size='340' side='right'caption='[[2zm6]], [[Resolution|resolution]] 3.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2zm6]] is a 21 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZM6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZM6 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2zm6]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZM6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZM6 FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.3&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2e5l|2e5l]], [[2hhh|2hhh]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zm6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zm6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zm6 RCSB], [http://www.ebi.ac.uk/pdbsum/2zm6 PDBsum], [http://www.topsan.org/Proteins/RSGI/2zm6 TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zm6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zm6 OCA], [https://pdbe.org/2zm6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zm6 RCSB], [https://www.ebi.ac.uk/pdbsum/2zm6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zm6 ProSAT], [https://www.topsan.org/Proteins/RSGI/2zm6 TOPSAN]</span></td></tr>
-
<table>
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/RS2_THET8 RS2_THET8] Spans the head-body hinge region of the 30S subunit. Is loosely associated with the 30S subunit.[HAMAP-Rule:MF_00291_B]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zm/2zm6_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zm/2zm6_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zm6 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Ribosomal protein S10|Ribosomal protein S10]]
 
*[[Ribosomal protein S11|Ribosomal protein S11]]
*[[Ribosomal protein S11|Ribosomal protein S11]]
-
*[[Ribosomal protein S12|Ribosomal protein S12]]
 
*[[Ribosomal protein S13|Ribosomal protein S13]]
*[[Ribosomal protein S13|Ribosomal protein S13]]
*[[Ribosomal protein S14|Ribosomal protein S14]]
*[[Ribosomal protein S14|Ribosomal protein S14]]
-
*[[Ribosomal protein S15|Ribosomal protein S15]]
 
-
*[[Ribosomal protein S16|Ribosomal protein S16]]
 
*[[Ribosomal protein S17|Ribosomal protein S17]]
*[[Ribosomal protein S17|Ribosomal protein S17]]
-
*[[Ribosomal protein S18|Ribosomal protein S18]]
 
-
*[[Ribosomal protein S19|Ribosomal protein S19]]
 
*[[Ribosomal protein S20|Ribosomal protein S20]]
*[[Ribosomal protein S20|Ribosomal protein S20]]
-
*[[Ribosomal protein S4|Ribosomal protein S4]]
 
-
*[[Ribosomal protein S6|Ribosomal protein S6]]
 
-
*[[Ribosomal protein S7|Ribosomal protein S7]]
 
-
*[[Ribosomal protein S8|Ribosomal protein S8]]
 
*[[Ribosomal protein S9|Ribosomal protein S9]]
*[[Ribosomal protein S9|Ribosomal protein S9]]
*[[Ribosomal protein THX|Ribosomal protein THX]]
*[[Ribosomal protein THX|Ribosomal protein THX]]
 +
*[[Ribosomal protein THX 3D structures|Ribosomal protein THX 3D structures]]
*[[Ribosome 3D structures|Ribosome 3D structures]]
*[[Ribosome 3D structures|Ribosome 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Thermus thermophilus]]
[[Category: Thermus thermophilus]]
-
[[Category: Fucini, P.]]
+
[[Category: Fucini P]]
-
[[Category: Hanawa-Suetsugu, K.]]
+
[[Category: Hanawa-Suetsugu K]]
-
[[Category: Ishii, R.]]
+
[[Category: Ishii R]]
-
[[Category: Kaminishi, T.]]
+
[[Category: Kaminishi T]]
-
[[Category: Kawazoe, M.]]
+
[[Category: Kawazoe M]]
-
[[Category: Nomura, M.]]
+
[[Category: Nomura M]]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[[Category: Schluenzen F]]
-
[[Category: Schluenzen, F.]]
+
[[Category: Shirouzu M]]
-
[[Category: Shirouzu, M.]]
+
[[Category: Takemoto C]]
-
[[Category: Takemoto, C.]]
+
[[Category: Wang H]]
-
[[Category: Wang, H.]]
+
[[Category: Wilson DN]]
-
[[Category: Wilson, D N.]]
+
[[Category: Yokoyama S]]
-
[[Category: Yokoyama, S.]]
+
-
[[Category: 30s ribosomal subunit]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: National project on protein structural and functional analyse]]
+
-
[[Category: Nppsfa]]
+
-
[[Category: Ribonucleoprotein]]
+
-
[[Category: Ribosomal protein]]
+
-
[[Category: Ribosome]]
+
-
[[Category: Riken structural genomics/proteomics initiative]]
+
-
[[Category: Rna-binding]]
+
-
[[Category: Rrna-binding]]
+
-
[[Category: Rsgi]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Trna-binding]]
+
-
[[Category: Zinc-finger]]
+

Current revision

Crystal structure of the Thermus thermophilus 30S ribosomal subunit

PDB ID 2zm6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2zm6"
Personal tools