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3dm2
From Proteopedia
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==Crystal structure of HIV-1 K103N mutant reverse transcriptase in complex with GW564511.== | ==Crystal structure of HIV-1 K103N mutant reverse transcriptase in complex with GW564511.== | ||
| - | <StructureSection load='3dm2' size='340' side='right' caption='[[3dm2]], [[Resolution|resolution]] 3.10Å' scene=''> | + | <StructureSection load='3dm2' size='340' side='right'caption='[[3dm2]], [[Resolution|resolution]] 3.10Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3dm2]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3dm2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/HIV-1_M:B_HXB2R HIV-1 M:B_HXB2R]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DM2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DM2 FirstGlance]. <br> |
| - | </td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GWE:N-{4-[AMINO(DIHYDROXY)-LAMBDA~4~-SULFANYL]-2-METHYLPHENYL}-2-(4-CHLORO-2-{[3-FLUORO-5-(TRIFLUOROMETHYL)PHENYL]CARBONYL}PHENOXY)ACETAMIDE'>GWE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4 | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.1Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene>, <scene name='pdbligand=GWE:N-{4-[AMINO(DIHYDROXY)-LAMBDA~4~-SULFANYL]-2-METHYLPHENYL}-2-(4-CHLORO-2-{[3-FLUORO-5-(TRIFLUOROMETHYL)PHENYL]CARBONYL}PHENOXY)ACETAMIDE'>GWE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | |
| - | <tr | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dm2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dm2 OCA], [https://pdbe.org/3dm2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dm2 RCSB], [https://www.ebi.ac.uk/pdbsum/3dm2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dm2 ProSAT]</span></td></tr> |
| - | + | </table> | |
| - | + | == Function == | |
| - | <table> | + | [https://www.uniprot.org/uniprot/A7YKL0_9HIV1 A7YKL0_9HIV1] |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/3dm2_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/3dm2_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dm2 ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 3dm2" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
| - | *[[Reverse transcriptase|Reverse transcriptase]] | + | *[[Reverse transcriptase 3D structures|Reverse transcriptase 3D structures]] |
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: HIV-1 M:B_HXB2R]] |
| - | + | [[Category: Large Structures]] | |
| - | [[Category: | + | [[Category: Chamberlain PP]] |
| - | [[Category: | + | [[Category: Ren J]] |
| - | [[Category: | + | [[Category: Stammers DK]] |
| - | [[Category: | + | |
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Current revision
Crystal structure of HIV-1 K103N mutant reverse transcriptase in complex with GW564511.
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