This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3kto

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:52, 2 January 2019) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of response regulator receiver protein from Pseudoalteromonas atlantica==
==Crystal structure of response regulator receiver protein from Pseudoalteromonas atlantica==
<StructureSection load='3kto' size='340' side='right' caption='[[3kto]], [[Resolution|resolution]] 1.98&Aring;' scene=''>
<StructureSection load='3kto' size='340' side='right' caption='[[3kto]], [[Resolution|resolution]] 1.98&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3kto]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudoalteromonas_atlantica_t6c Pseudoalteromonas atlantica t6c]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KTO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KTO FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3kto]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Psea6 Psea6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KTO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KTO FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Patl_2095 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=342610 Pseudoalteromonas atlantica T6c])</td></tr>
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Patl_2095 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=342610 PSEA6])</td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3kto FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kto OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3kto RCSB], [http://www.ebi.ac.uk/pdbsum/3kto PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3kto FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kto OCA], [http://pdbe.org/3kto PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3kto RCSB], [http://www.ebi.ac.uk/pdbsum/3kto PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3kto ProSAT]</span></td></tr>
-
<table>
+
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kt/3kto_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kt/3kto_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kto ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
Line 22: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Pseudoalteromonas atlantica t6c]]
+
[[Category: Psea6]]
-
[[Category: Burley, S K.]]
+
[[Category: Burley, S K]]
-
[[Category: Damodharan, L.]]
+
[[Category: Damodharan, L]]
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
-
[[Category: Swaminathan, S.]]
+
-
[[Category: New york sgx research center for structural genomic]]
+
-
[[Category: Nysgxrc]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-ii]]
+
-
[[Category: Response regulator receiver protein]]
+
[[Category: Structural genomic]]
[[Category: Structural genomic]]
 +
[[Category: Swaminathan, S]]
 +
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
 +
[[Category: PSI, Protein structure initiative]]
 +
[[Category: Response regulator receiver protein]]
[[Category: Transcription regulator]]
[[Category: Transcription regulator]]

Current revision

Crystal structure of response regulator receiver protein from Pseudoalteromonas atlantica

3kto, resolution 1.98Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools