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1gr3

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==STRUCTURE OF THE HUMAN COLLAGEN X NC1 TRIMER==
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<StructureSection load='1gr3' size='340' side='right' caption='[[1gr3]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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==Structure of the human collagen X NC1 trimer==
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<StructureSection load='1gr3' size='340' side='right'caption='[[1gr3]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[1gr3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GR3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GR3 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[1gr3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GR3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GR3 FirstGlance]. <br>
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</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CPS:3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE'>CPS</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene><br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gr3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gr3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1gr3 RCSB], [http://www.ebi.ac.uk/pdbsum/1gr3 PDBsum]</span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CPS:3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE'>CPS</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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<table>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gr3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gr3 OCA], [https://pdbe.org/1gr3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gr3 RCSB], [https://www.ebi.ac.uk/pdbsum/1gr3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gr3 ProSAT]</span></td></tr>
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</table>
== Disease ==
== Disease ==
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[[http://www.uniprot.org/uniprot/COAA1_HUMAN COAA1_HUMAN]] Defects in COL10A1 are the cause of Schmid type metaphyseal chondrodysplasia (SMCD) [MIM:[http://omim.org/entry/156500 156500]]. SMCD is a dominantly inherited disorder of the osseous skeleton. The cardinal features of the phenotype are mild short stature, coxa vara and a waddling gait. Radiography usually shows sclerosis of the ribs, flaring of the metaphyses, and a wide irregular growth plate, especially of the knees. A variant form of SMCD is spondylometaphyseal dysplasia Japanese type. It is characterized by spinal involvement comprising mild platyspondyly, vertebral body abnormalities, and end-plate irregularity.<ref>PMID:8304336</ref> <ref>PMID:8004099</ref> <ref>PMID:7876225</ref> <ref>PMID:7607655</ref> <ref>PMID:8782043</ref> <ref>PMID:9067753</ref> <ref>PMID:9852679</ref> <ref>PMID:15880705</ref>
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[https://www.uniprot.org/uniprot/COAA1_HUMAN COAA1_HUMAN] Defects in COL10A1 are the cause of Schmid type metaphyseal chondrodysplasia (SMCD) [MIM:[https://omim.org/entry/156500 156500]. SMCD is a dominantly inherited disorder of the osseous skeleton. The cardinal features of the phenotype are mild short stature, coxa vara and a waddling gait. Radiography usually shows sclerosis of the ribs, flaring of the metaphyses, and a wide irregular growth plate, especially of the knees. A variant form of SMCD is spondylometaphyseal dysplasia Japanese type. It is characterized by spinal involvement comprising mild platyspondyly, vertebral body abnormalities, and end-plate irregularity.<ref>PMID:8304336</ref> <ref>PMID:8004099</ref> <ref>PMID:7876225</ref> <ref>PMID:7607655</ref> <ref>PMID:8782043</ref> <ref>PMID:9067753</ref> <ref>PMID:9852679</ref> <ref>PMID:15880705</ref>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/COAA1_HUMAN COAA1_HUMAN]] Type X collagen is a product of hypertrophic chondrocytes and has been localized to presumptive mineralization zones of hyaline cartilage.
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[https://www.uniprot.org/uniprot/COAA1_HUMAN COAA1_HUMAN] Type X collagen is a product of hypertrophic chondrocytes and has been localized to presumptive mineralization zones of hyaline cartilage.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gr/1gr3_consurf.spt"</scriptWhenChecked>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gr/1gr3_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1gr3 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
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<div class="pdbe-citations 1gr3" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
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*[[Collagen|Collagen]]
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*[[Collagen 3D structures|Collagen 3D structures]]
== References ==
== References ==
<references/>
<references/>
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</StructureSection>
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Bogin, O.]]
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[[Category: Large Structures]]
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[[Category: Hohenester, E.]]
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[[Category: Bogin O]]
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[[Category: Kvansakul, M.]]
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[[Category: Hohenester E]]
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[[Category: Rom, E.]]
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[[Category: Kvansakul M]]
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[[Category: Singer, J.]]
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[[Category: Rom E]]
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[[Category: Yayon, A.]]
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[[Category: Singer J]]
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[[Category: Collagen]]
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[[Category: Yayon A]]
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[[Category: Connective tissue]]
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[[Category: Extracellular matrix]]
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Current revision

Structure of the human collagen X NC1 trimer

PDB ID 1gr3

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