1nkw
From Proteopedia
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==Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans== | ==Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans== | ||
| - | <StructureSection load='1nkw' size='340' side='right' caption='[[1nkw]], [[Resolution|resolution]] 3.10Å' scene=''> | + | <StructureSection load='1nkw' size='340' side='right'caption='[[1nkw]], [[Resolution|resolution]] 3.10Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[1nkw]] is a | + | <table><tr><td colspan='2'>[[1nkw]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans Deinococcus radiodurans]. This structure supersedes the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1lnr 1lnr], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1kpj 1kpj] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1kc9 1kc9]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NKW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NKW FirstGlance]. <br> |
| - | </td></tr><tr><td class="sblockLbl"><b>[[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.1Å</td></tr> |
| - | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1nkw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nkw OCA], [https://pdbe.org/1nkw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1nkw RCSB], [https://www.ebi.ac.uk/pdbsum/1nkw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1nkw ProSAT]</span></td></tr> |
| - | <table> | + | </table> |
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/RL2_DEIRA RL2_DEIRA] One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome (By similarity).[HAMAP-Rule:MF_01320_B] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nk/1nkw_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nk/1nkw_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1nkw ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 1nkw" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
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*[[Ribosome|Ribosome]] | *[[Ribosome|Ribosome]] | ||
*[[Ribosome 3D structures|Ribosome 3D structures]] | *[[Ribosome 3D structures|Ribosome 3D structures]] | ||
| - | *[[User:Wayne Decatur/Haloarcula Large Ribosomal Subunit|User:Wayne Decatur/Haloarcula Large Ribosomal Subunit]] | ||
*[[User:Wayne Decatur/kink-turn motif|User:Wayne Decatur/kink-turn motif]] | *[[User:Wayne Decatur/kink-turn motif|User:Wayne Decatur/kink-turn motif]] | ||
== References == | == References == | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Deinococcus radiodurans]] | [[Category: Deinococcus radiodurans]] | ||
| - | [[Category: Agmon | + | [[Category: Large Structures]] |
| - | [[Category: Bartels | + | [[Category: Agmon I]] |
| - | [[Category: Bashan | + | [[Category: Bartels H]] |
| - | [[Category: Franceschi | + | [[Category: Bashan A]] |
| - | [[Category: Gat | + | [[Category: Franceschi F]] |
| - | [[Category: Harms | + | [[Category: Gat S]] |
| - | [[Category: Schluenzen | + | [[Category: Harms JM]] |
| - | [[Category: Yonath | + | [[Category: Schluenzen F]] |
| - | [[Category: Zarivach | + | [[Category: Yonath A]] |
| - | + | [[Category: Zarivach R]] | |
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Current revision
Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans
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Categories: Deinococcus radiodurans | Large Structures | Agmon I | Bartels H | Bashan A | Franceschi F | Gat S | Harms JM | Schluenzen F | Yonath A | Zarivach R
