1xw8
From Proteopedia
(Difference between revisions)
| (5 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| + | |||
==X-ray structure of putative lactam utilization protein YBGL. Northeast Structural Genomics Consortium target ET90.== | ==X-ray structure of putative lactam utilization protein YBGL. Northeast Structural Genomics Consortium target ET90.== | ||
| - | <StructureSection load='1xw8' size='340' side='right' caption='[[1xw8]], [[Resolution|resolution]] 2.00Å' scene=''> | + | <StructureSection load='1xw8' size='340' side='right'caption='[[1xw8]], [[Resolution|resolution]] 2.00Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[1xw8]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[1xw8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XW8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XW8 FirstGlance]. <br> |
| - | </td></tr><tr><td class="sblockLbl"><b>[[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> |
| - | <tr><td class="sblockLbl"><b>[[ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xw8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xw8 OCA], [https://pdbe.org/1xw8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xw8 RCSB], [https://www.ebi.ac.uk/pdbsum/1xw8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xw8 ProSAT], [https://www.topsan.org/Proteins/NESGC/1xw8 TOPSAN]</span></td></tr> | |
| - | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | </table> |
| - | <table> | + | == Function == |
| + | [https://www.uniprot.org/uniprot/PXPA_ECOLI PXPA_ECOLI] Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.[HAMAP-Rule:MF_00691]<ref>PMID:28830929</ref> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xw/1xw8_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xw/1xw8_consurf.spt"</scriptWhenChecked> |
| - | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/ | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> |
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xw8 ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Escherichia coli]] | [[Category: Escherichia coli]] | ||
| - | [[Category: Acton | + | [[Category: Large Structures]] |
| - | [[Category: Chen | + | [[Category: Acton TB]] |
| - | [[Category: Hunt | + | [[Category: Chen Y]] |
| - | [[Category: Kuzin | + | [[Category: Hunt JF]] |
| - | [[Category: Ma | + | [[Category: Kuzin AP]] |
| - | [[Category: Montelione | + | [[Category: Ma L-C]] |
| - | + | [[Category: Montelione GT]] | |
| - | [[Category: Tong | + | [[Category: Tong L]] |
| - | [[Category: Vorobiev | + | [[Category: Vorobiev SM]] |
| - | [[Category: Xiao | + | [[Category: Xiao R]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
X-ray structure of putative lactam utilization protein YBGL. Northeast Structural Genomics Consortium target ET90.
| |||||||||||
Categories: Escherichia coli | Large Structures | Acton TB | Chen Y | Hunt JF | Kuzin AP | Ma L-C | Montelione GT | Tong L | Vorobiev SM | Xiao R
