2icp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:12, 30 October 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of the bacterial antitoxin HigA from Escherichia coli at pH 4.0. Northeast Structural Genomics Consortium TARGET ER390.==
==Crystal structure of the bacterial antitoxin HigA from Escherichia coli at pH 4.0. Northeast Structural Genomics Consortium TARGET ER390.==
-
<StructureSection load='2icp' size='340' side='right' caption='[[2icp]], [[Resolution|resolution]] 1.88&Aring;' scene=''>
+
<StructureSection load='2icp' size='340' side='right'caption='[[2icp]], [[Resolution|resolution]] 1.88&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2icp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ICP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ICP FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2icp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_CFT073 Escherichia coli CFT073]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ICP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ICP FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.88&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">higa ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2icp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2icp OCA], [https://pdbe.org/2icp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2icp RCSB], [https://www.ebi.ac.uk/pdbsum/2icp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2icp ProSAT], [https://www.topsan.org/Proteins/NESGC/2icp TOPSAN]</span></td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2icp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2icp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2icp RCSB], [http://www.ebi.ac.uk/pdbsum/2icp PDBsum], [http://www.topsan.org/Proteins/NESGC/2icp TOPSAN]</span></td></tr>
+
</table>
-
<table>
+
== Function ==
 +
[https://www.uniprot.org/uniprot/YDDM_ECOL6 YDDM_ECOL6]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ic/2icp_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ic/2icp_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2icp ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Escherichia coli]]
+
[[Category: Escherichia coli CFT073]]
-
[[Category: Abashidze, M.]]
+
[[Category: Large Structures]]
-
[[Category: Acton, T B.]]
+
[[Category: Abashidze M]]
-
[[Category: Arbing, M A.]]
+
[[Category: Acton TB]]
-
[[Category: Baran, M C.]]
+
[[Category: Arbing MA]]
-
[[Category: Cunningham, K.]]
+
[[Category: Baran MC]]
-
[[Category: Hunt, J F.]]
+
[[Category: Cunningham K]]
-
[[Category: Hurley, J M.]]
+
[[Category: Hunt JF]]
-
[[Category: Inouye, M.]]
+
[[Category: Hurley JM]]
-
[[Category: Janjua, H.]]
+
[[Category: Inouye M]]
-
[[Category: Liu, J.]]
+
[[Category: Janjua H]]
-
[[Category: Ma, L C.]]
+
[[Category: Liu J]]
-
[[Category: Montelione, G T.]]
+
[[Category: Ma LC]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Montelione GT]]
-
[[Category: Rost, B.]]
+
[[Category: Rost B]]
-
[[Category: Woychik, N A.]]
+
[[Category: Woychik NA]]
-
[[Category: Xiao, R.]]
+
[[Category: Xiao R]]
-
[[Category: Zhao, L.]]
+
[[Category: Zhao L]]
-
[[Category: Dna binding protein]]
+
-
[[Category: Helix-turn-helix]]
+
-
[[Category: Nesg]]
+
-
[[Category: Northeast structural genomics consortium]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+

Current revision

Crystal structure of the bacterial antitoxin HigA from Escherichia coli at pH 4.0. Northeast Structural Genomics Consortium TARGET ER390.

PDB ID 2icp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools