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2koi
From Proteopedia
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==Refined solution structure of a cyanobacterial phytochrome GAF domain in the red light-absorbing ground state== | ==Refined solution structure of a cyanobacterial phytochrome GAF domain in the red light-absorbing ground state== | ||
| - | <StructureSection load='2koi' size='340' side='right' caption='[[2koi]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | + | <StructureSection load='2koi' size='340' side='right'caption='[[2koi]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2koi]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2koi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cyanobacteria_bacterium_yellowstone_b' Cyanobacteria bacterium yellowstone b']. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KOI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KOI FirstGlance]. <br> |
| - | </td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CYC:PHYCOCYANOBILIN'>CYC</scene>< | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CYC:PHYCOCYANOBILIN'>CYC</scene></td></tr> |
| - | <tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CYB_2465 ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CYB_2465 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=321332 Cyanobacteria bacterium Yellowstone B'])</td></tr> |
| - | <tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Histidine_kinase Histidine kinase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.13.3 2.7.13.3] </span></td></tr> |
| - | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2koi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2koi OCA], [https://pdbe.org/2koi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2koi RCSB], [https://www.ebi.ac.uk/pdbsum/2koi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2koi ProSAT]</span></td></tr> |
| - | <table> | + | </table> |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ko/2koi_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ko/2koi_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2koi ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 2koi" style="background-color:#fffaf0;"></div> | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Cyanobacteria bacterium yellowstone b']] | ||
[[Category: Histidine kinase]] | [[Category: Histidine kinase]] | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Structural genomic]] |
| - | [[Category: Cornilescu, C C | + | [[Category: Cornilescu, C C]] |
| - | [[Category: Cornilescu, G | + | [[Category: Cornilescu, G]] |
| - | [[Category: Markley, J L | + | [[Category: Markley, J L]] |
| - | [[Category: Ulijasz, A T | + | [[Category: Ulijasz, A T]] |
| - | [[Category: Vierstra, R D | + | [[Category: Vierstra, R D]] |
[[Category: Bacteriophytochrome]] | [[Category: Bacteriophytochrome]] | ||
| - | [[Category: Center for eukaryotic structural genomic]] | ||
[[Category: Cesg]] | [[Category: Cesg]] | ||
[[Category: Cyanobacterial phytochrome]] | [[Category: Cyanobacterial phytochrome]] | ||
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[[Category: Phycocyanobilin]] | [[Category: Phycocyanobilin]] | ||
[[Category: Phytochrome]] | [[Category: Phytochrome]] | ||
| - | [[Category: Protein structure initiative | + | [[Category: PSI, Protein structure initiative]] |
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[[Category: Transferase]] | [[Category: Transferase]] | ||
Current revision
Refined solution structure of a cyanobacterial phytochrome GAF domain in the red light-absorbing ground state
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Categories: Cyanobacteria bacterium yellowstone b' | Histidine kinase | Large Structures | Structural genomic | Cornilescu, C C | Cornilescu, G | Markley, J L | Ulijasz, A T | Vierstra, R D | Bacteriophytochrome | Cesg | Cyanobacterial phytochrome | Gaf domain | Kinase | Pcb | Phosphoprotein | Phycocyanobilin | Phytochrome | PSI, Protein structure initiative | Transferase

