2k0q

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (19:08, 29 May 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Solution structure of CopK, a periplasmic protein involved in copper resistance in Cupriavidus metallidurans CH34==
==Solution structure of CopK, a periplasmic protein involved in copper resistance in Cupriavidus metallidurans CH34==
-
<StructureSection load='2k0q' size='340' side='right' caption='[[2k0q]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+
<StructureSection load='2k0q' size='340' side='right'caption='[[2k0q]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2k0q]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Cupriavidus_metallidurans Cupriavidus metallidurans]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K0Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2K0Q FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2k0q]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cupriavidus_metallidurans_CH34 Cupriavidus metallidurans CH34]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K0Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K0Q FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">copK ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=119219 Cupriavidus metallidurans])</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2k0q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k0q OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2k0q RCSB], [http://www.ebi.ac.uk/pdbsum/2k0q PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k0q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k0q OCA], [https://pdbe.org/2k0q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k0q RCSB], [https://www.ebi.ac.uk/pdbsum/2k0q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k0q ProSAT]</span></td></tr>
-
<table>
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/COPK_CUPMC COPK_CUPMC] Involved in resistance to copper. Can bind up to 2 copper ions. Has higher affinity for Cu(+) than for Cu(2+).<ref>PMID:18533181</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k0/2k0q_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k0/2k0q_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2k0q ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 24: Line 27:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 2k0q" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Cupriavidus metallidurans]]
+
[[Category: Cupriavidus metallidurans CH34]]
-
[[Category: Aelst, S van.]]
+
[[Category: Large Structures]]
-
[[Category: Bersch, B.]]
+
[[Category: Bersch B]]
-
[[Category: Coves, J.]]
+
[[Category: Coves J]]
-
[[Category: Favier, A.]]
+
[[Category: Favier A]]
-
[[Category: Mergeay, M.]]
+
[[Category: Mergeay M]]
-
[[Category: Schanda, P.]]
+
[[Category: Schanda P]]
-
[[Category: Vallaeys, T.]]
+
[[Category: Vallaeys T]]
-
[[Category: Wattiez, R.]]
+
[[Category: Wattiez R]]
-
[[Category: Heavy metal resistance]]
+
[[Category: Van Aelst S]]
-
[[Category: Metal binding protein]]
+
-
[[Category: Open barrel]]
+
-
[[Category: Plasmid-encoded]]
+

Current revision

Solution structure of CopK, a periplasmic protein involved in copper resistance in Cupriavidus metallidurans CH34

PDB ID 2k0q

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools