This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2ike
From Proteopedia
(Difference between revisions)
| (3 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| + | |||
==Solution Structure of the second Clip domain in PAP2== | ==Solution Structure of the second Clip domain in PAP2== | ||
| - | <StructureSection load='2ike' size='340' side='right' caption='[[2ike]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | + | <StructureSection load='2ike' size='340' side='right'caption='[[2ike]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2ike]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2ike]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Carolina_sphinx Carolina sphinx]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IKE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IKE FirstGlance]. <br> |
| - | </td></tr><tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2ikd|2ikd]]</td></tr> | + | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2ikd|2ikd]]</div></td></tr> |
| - | <tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PAP-2 ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PAP-2 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7130 Carolina sphinx])</td></tr> |
| - | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ike FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ike OCA], [https://pdbe.org/2ike PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ike RCSB], [https://www.ebi.ac.uk/pdbsum/2ike PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ike ProSAT]</span></td></tr> |
| - | <table> | + | </table> |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ik/2ike_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ik/2ike_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ike ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Carolina sphinx]] |
| - | [[Category: Dai, H E | + | [[Category: Large Structures]] |
| - | [[Category: Huang, R D | + | [[Category: Dai, H E]] |
| - | [[Category: Jiang, H B | + | [[Category: Huang, R D]] |
| - | [[Category: Lv, Z Q | + | [[Category: Jiang, H B]] |
| - | [[Category: Prakash, O | + | [[Category: Lv, Z Q]] |
| - | [[Category: Velde, D V | + | [[Category: Prakash, O]] |
| + | [[Category: Velde, D V]] | ||
[[Category: Beta-sheet]] | [[Category: Beta-sheet]] | ||
[[Category: Double helix]] | [[Category: Double helix]] | ||
[[Category: Hydrolase]] | [[Category: Hydrolase]] | ||
Current revision
Solution Structure of the second Clip domain in PAP2
| |||||||||||
Categories: Carolina sphinx | Large Structures | Dai, H E | Huang, R D | Jiang, H B | Lv, Z Q | Prakash, O | Velde, D V | Beta-sheet | Double helix | Hydrolase
