2h5f

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:15, 17 October 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Denmotoxin: A the three-finger toxin from colubrid snake Boiga dendrophila with bird-specific activity==
==Denmotoxin: A the three-finger toxin from colubrid snake Boiga dendrophila with bird-specific activity==
-
<StructureSection load='2h5f' size='340' side='right' caption='[[2h5f]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
<StructureSection load='2h5f' size='340' side='right'caption='[[2h5f]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2h5f]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Boiga_dendrophila Boiga dendrophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2H5F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2H5F FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2h5f]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Boiga_dendrophila Boiga dendrophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2H5F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2H5F FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene><br>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2h5f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2h5f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2h5f RCSB], [http://www.ebi.ac.uk/pdbsum/2h5f PDBsum]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
<table>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2h5f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2h5f OCA], [https://pdbe.org/2h5f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2h5f RCSB], [https://www.ebi.ac.uk/pdbsum/2h5f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2h5f ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/3NB_BOIDE 3NB_BOIDE] This bird-specific postsynaptic neurotoxin irreversibly binds and inhibits the chick muscle alpha-1-beta-1-gamma-delta (CHRNA1-CHRNB1-CHRNG-CHNRD) nicotinic acetylcholine receptor (nAChR) 100-fold more compared with the mouse receptor. The weak binding to mouse receptor is reversible.<ref>PMID:16864572</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/h5/2h5f_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/h5/2h5f_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2h5f ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 24: Line 28:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 2h5f" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
Line 29: Line 34:
</StructureSection>
</StructureSection>
[[Category: Boiga dendrophila]]
[[Category: Boiga dendrophila]]
-
[[Category: Kini, R M.]]
+
[[Category: Large Structures]]
-
[[Category: Pawlak, J.]]
+
[[Category: Kini RM]]
-
[[Category: Stura, E A.]]
+
[[Category: Pawlak J]]
-
[[Category: Neurotoxin]]
+
[[Category: Stura EA]]
-
[[Category: Snake venom]]
+
-
[[Category: Three-finger toxin]]
+
-
[[Category: Toxin]]
+

Current revision

Denmotoxin: A the three-finger toxin from colubrid snake Boiga dendrophila with bird-specific activity

PDB ID 2h5f

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools