This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2k7h

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (19:10, 29 May 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
 +
==NMR solution structure of soybean allergen Gly m 4==
==NMR solution structure of soybean allergen Gly m 4==
-
<StructureSection load='2k7h' size='340' side='right' caption='[[2k7h]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+
<StructureSection load='2k7h' size='340' side='right'caption='[[2k7h]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2k7h]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K7H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2K7H FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2k7h]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K7H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K7H FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2k7h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k7h OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2k7h RCSB], [http://www.ebi.ac.uk/pdbsum/2k7h PDBsum]</span></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
<table>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k7h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k7h OCA], [https://pdbe.org/2k7h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k7h RCSB], [https://www.ebi.ac.uk/pdbsum/2k7h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k7h ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SAM22_SOYBN SAM22_SOYBN]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k7/2k7h_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k7/2k7h_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2k7h ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 23: Line 27:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 2k7h" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
Line 28: Line 33:
</StructureSection>
</StructureSection>
[[Category: Glycine max]]
[[Category: Glycine max]]
-
[[Category: Ballmer-Weber, B K.]]
+
[[Category: Large Structures]]
-
[[Category: Berkner, H.]]
+
[[Category: Ballmer-Weber BK]]
-
[[Category: Mittag, D.]]
+
[[Category: Berkner H]]
-
[[Category: Neudecker, P.]]
+
[[Category: Mittag D]]
-
[[Category: Roesch, P.]]
+
[[Category: Neudecker P]]
-
[[Category: Schweimer, K.]]
+
[[Category: Roesch P]]
-
[[Category: Vieths, S.]]
+
[[Category: Schweimer K]]
-
[[Category: Allergen]]
+
[[Category: Vieths S]]
-
[[Category: Allergen]]
+
-
[[Category: Pathogenesis-related protein]]
+
-
[[Category: Plant defense]]
+
-
[[Category: Protein]]
+
-
[[Category: Soybean]]
+

Current revision

NMR solution structure of soybean allergen Gly m 4

PDB ID 2k7h

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools