2ppg

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:29, 30 October 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of putative isomerase from Sinorhizobium meliloti==
==Crystal structure of putative isomerase from Sinorhizobium meliloti==
-
<StructureSection load='2ppg' size='340' side='right' caption='[[2ppg]], [[Resolution|resolution]] 2.49&Aring;' scene=''>
+
<StructureSection load='2ppg' size='340' side='right'caption='[[2ppg]], [[Resolution|resolution]] 2.49&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2ppg]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Sinorhizobium_meliloti_1021 Sinorhizobium meliloti 1021]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PPG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2PPG FirstGlance]. <br>
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PPG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PPG FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.49&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RA0374, SMa0708 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266834 Sinorhizobium meliloti 1021])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ppg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ppg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ppg RCSB], [http://www.ebi.ac.uk/pdbsum/2ppg PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2ppg TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ppg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ppg OCA], [https://pdbe.org/2ppg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ppg RCSB], [https://www.ebi.ac.uk/pdbsum/2ppg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ppg ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2ppg TOPSAN]</span></td></tr>
-
<table>
+
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pp/2ppg_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pp/2ppg_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ppg ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Sinorhizobium meliloti 1021]]
+
[[Category: Large Structures]]
-
[[Category: Almo, S C.]]
+
[[Category: Almo SC]]
-
[[Category: Burley, S K.]]
+
[[Category: Burley SK]]
-
[[Category: Dickey, M.]]
+
[[Category: Dickey M]]
-
[[Category: Groshong, C.]]
+
[[Category: Groshong C]]
-
[[Category: Logan, C.]]
+
[[Category: Logan C]]
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
[[Category: Ramagopal UA]]
-
[[Category: Ramagopal, U A.]]
+
[[Category: Sauder JM]]
-
[[Category: Sauder, J M.]]
+
[[Category: Toro R]]
-
[[Category: Toro, R.]]
+
-
[[Category: Isomerase]]
+
-
[[Category: New york sgx research center for structural genomic]]
+
-
[[Category: Nysgxrc]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+

Current revision

Crystal structure of putative isomerase from Sinorhizobium meliloti

PDB ID 2ppg

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools