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2p3e
From Proteopedia
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==Crystal structure of AQ1208 from Aquifex aeolicus== | ==Crystal structure of AQ1208 from Aquifex aeolicus== | ||
| - | <StructureSection load='2p3e' size='340' side='right' caption='[[2p3e]], [[Resolution|resolution]] 1.99Å' scene=''> | + | <StructureSection load='2p3e' size='340' side='right'caption='[[2p3e]], [[Resolution|resolution]] 1.99Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2p3e]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2p3e]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus_VF5 Aquifex aeolicus VF5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P3E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P3E FirstGlance]. <br> |
| - | </td></tr><tr><td class="sblockLbl"><b>[[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.99Å</td></tr> |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p3e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p3e OCA], [https://pdbe.org/2p3e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p3e RCSB], [https://www.ebi.ac.uk/pdbsum/2p3e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p3e ProSAT], [https://www.topsan.org/Proteins/RSGI/2p3e TOPSAN]</span></td></tr> | |
| - | <tr | + | </table> |
| - | + | == Function == | |
| - | <table> | + | [https://www.uniprot.org/uniprot/DCDA_AQUAE DCDA_AQUAE] Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine (By similarity).[HAMAP-Rule:MF_02120] |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p3/2p3e_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p3/2p3e_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p3e ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Aquifex aeolicus]] | + | [[Category: Aquifex aeolicus VF5]] |
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Chen | + | [[Category: Chen L]] |
| - | [[Category: Ebihara | + | [[Category: Ebihara A]] |
| - | [[Category: Fu | + | [[Category: Fu Z-Q]] |
| - | + | [[Category: Kuramitsu S]] | |
| - | [[Category: Kuramitsu | + | [[Category: Rose JP]] |
| - | + | [[Category: Shinkai A]] | |
| - | [[Category: Rose | + | [[Category: Swindell II JT]] |
| - | [[Category: | + | [[Category: Wang B-C]] |
| - | [[Category: | + | [[Category: Yokoyama S]] |
| - | [[Category: Wang | + | [[Category: Zhu J]] |
| - | [[Category: Yokoyama | + | |
| - | [[Category: Zhu | + | |
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Current revision
Crystal structure of AQ1208 from Aquifex aeolicus
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Categories: Aquifex aeolicus VF5 | Large Structures | Chen L | Ebihara A | Fu Z-Q | Kuramitsu S | Rose JP | Shinkai A | Swindell II JT | Wang B-C | Yokoyama S | Zhu J
