This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2r76
From Proteopedia
(Difference between revisions)
| (4 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| + | |||
==Crystal structure of the rare lipoprotein B (SO_1173) from Shewanella oneidensis, Northeast Structural Genomics Consortium Target SoR91A== | ==Crystal structure of the rare lipoprotein B (SO_1173) from Shewanella oneidensis, Northeast Structural Genomics Consortium Target SoR91A== | ||
| - | <StructureSection load='2r76' size='340' side='right' caption='[[2r76]], [[Resolution|resolution]] 2.60Å' scene=''> | + | <StructureSection load='2r76' size='340' side='right'caption='[[2r76]], [[Resolution|resolution]] 2.60Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2r76]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2r76]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Sheon Sheon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R76 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R76 FirstGlance]. <br> |
| - | </td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | <tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SO_1173 ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SO_1173 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=211586 SHEON])</td></tr> |
| - | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r76 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r76 OCA], [https://pdbe.org/2r76 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r76 RCSB], [https://www.ebi.ac.uk/pdbsum/2r76 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r76 ProSAT], [https://www.topsan.org/Proteins/NESGC/2r76 TOPSAN]</span></td></tr> |
| - | <table> | + | </table> |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r7/2r76_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r7/2r76_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r76 ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Acton, T B | + | [[Category: Sheon]] |
| - | [[Category: Baran, M C | + | [[Category: Acton, T B]] |
| - | [[Category: Chen, Y | + | [[Category: Baran, M C]] |
| - | [[Category: Cunningham, K | + | [[Category: Chen, Y]] |
| - | [[Category: Fang, Y | + | [[Category: Cunningham, K]] |
| - | [[Category: Forouhar, F | + | [[Category: Fang, Y]] |
| - | [[Category: Hunt, J F | + | [[Category: Forouhar, F]] |
| - | [[Category: Maglaqui, M | + | [[Category: Hunt, J F]] |
| - | [[Category: Mao, L | + | [[Category: Maglaqui, M]] |
| - | [[Category: Montelione, G T | + | [[Category: Mao, L]] |
| - | [[Category: | + | [[Category: Montelione, G T]] |
| - | [[Category: Owen, L A | + | [[Category: Structural genomic]] |
| - | [[Category: Seetharaman, J | + | [[Category: Owen, L A]] |
| - | [[Category: Tong, L | + | [[Category: Seetharaman, J]] |
| - | [[Category: Xiao, R | + | [[Category: Tong, L]] |
| + | [[Category: Xiao, R]] | ||
[[Category: Alpha-beta protein]] | [[Category: Alpha-beta protein]] | ||
[[Category: Lipoprotein]] | [[Category: Lipoprotein]] | ||
[[Category: Nesg]] | [[Category: Nesg]] | ||
| - | [[Category: | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of the rare lipoprotein B (SO_1173) from Shewanella oneidensis, Northeast Structural Genomics Consortium Target SoR91A
| |||||||||||
Categories: Large Structures | Sheon | Acton, T B | Baran, M C | Chen, Y | Cunningham, K | Fang, Y | Forouhar, F | Hunt, J F | Maglaqui, M | Mao, L | Montelione, G T | Structural genomic | Owen, L A | Seetharaman, J | Tong, L | Xiao, R | Alpha-beta protein | Lipoprotein | Nesg | PSI, Protein structure initiative
