2p6y
From Proteopedia
(Difference between revisions)
| (4 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| + | |||
==X-ray structure of the protein Q9KM02_VIBCH from Vibrio cholerae at the resolution 1.63 A. Northeast Structural Genomics Consortium target VcR80.== | ==X-ray structure of the protein Q9KM02_VIBCH from Vibrio cholerae at the resolution 1.63 A. Northeast Structural Genomics Consortium target VcR80.== | ||
| - | <StructureSection load='2p6y' size='340' side='right' caption='[[2p6y]], [[Resolution|resolution]] 1.63Å' scene=''> | + | <StructureSection load='2p6y' size='340' side='right'caption='[[2p6y]], [[Resolution|resolution]] 1.63Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2p6y]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2p6y]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillo_virgola_del_koch"_trevisan_1884 "bacillo virgola del koch" trevisan 1884]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P6Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P6Y FirstGlance]. <br> |
| - | </td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>< | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
| - | <tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | <tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2nmu|2nmu]], [[2hx0|2hx0]], [[2h6l|2h6l]]</td></tr> | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2nmu|2nmu]], [[2hx0|2hx0]], [[2h6l|2h6l]]</div></td></tr> |
| - | <tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VCA0587 ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VCA0587 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=666 "Bacillo virgola del Koch" Trevisan 1884])</td></tr> |
| - | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p6y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p6y OCA], [https://pdbe.org/2p6y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p6y RCSB], [https://www.ebi.ac.uk/pdbsum/2p6y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p6y ProSAT], [https://www.topsan.org/Proteins/NESGC/2p6y TOPSAN]</span></td></tr> |
| - | <table> | + | </table> |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p6/2p6y_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p6/2p6y_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p6y ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Bacillo virgola del koch trevisan 1884]] |
| - | [[Category: Abashidze, M | + | [[Category: Large Structures]] |
| - | [[Category: Acton, T B | + | [[Category: Abashidze, M]] |
| - | [[Category: Baran, M C | + | [[Category: Acton, T B]] |
| - | [[Category: Chen, C X | + | [[Category: Baran, M C]] |
| - | [[Category: Cunningham, K | + | [[Category: Chen, C X]] |
| - | [[Category: Fang, Y | + | [[Category: Cunningham, K]] |
| - | [[Category: Hunt, J | + | [[Category: Fang, Y]] |
| - | [[Category: Jayaraman, S | + | [[Category: Hunt, J]] |
| - | [[Category: Kuzin, A P | + | [[Category: Jayaraman, S]] |
| - | [[Category: Liu, J | + | [[Category: Kuzin, A P]] |
| - | [[Category: Montelione, G T | + | [[Category: Liu, J]] |
| - | [[Category: | + | [[Category: Montelione, G T]] |
| - | [[Category: Owens, L | + | [[Category: Structural genomic]] |
| - | [[Category: Rost, B | + | [[Category: Owens, L]] |
| - | [[Category: Tong, L | + | [[Category: Rost, B]] |
| - | [[Category: Wang, C | + | [[Category: Tong, L]] |
| - | [[Category: Xiao, R | + | [[Category: Wang, C]] |
| + | [[Category: Xiao, R]] | ||
[[Category: Nesg]] | [[Category: Nesg]] | ||
| - | [[Category: | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
[[Category: Q9km02_vibch]] | [[Category: Q9km02_vibch]] | ||
| - | [[Category: Structural genomic]] | ||
[[Category: Unknown function]] | [[Category: Unknown function]] | ||
[[Category: Vcr80]] | [[Category: Vcr80]] | ||
Current revision
X-ray structure of the protein Q9KM02_VIBCH from Vibrio cholerae at the resolution 1.63 A. Northeast Structural Genomics Consortium target VcR80.
| |||||||||||
Categories: Bacillo virgola del koch trevisan 1884 | Large Structures | Abashidze, M | Acton, T B | Baran, M C | Chen, C X | Cunningham, K | Fang, Y | Hunt, J | Jayaraman, S | Kuzin, A P | Liu, J | Montelione, G T | Structural genomic | Owens, L | Rost, B | Tong, L | Wang, C | Xiao, R | Nesg | PSI, Protein structure initiative | Q9km02 vibch | Unknown function | Vcr80
