2wvd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:17, 20 December 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
==STRUCTURAL AND MECHANISTIC INSIGHTS INTO HELICOBACTER PYLORI NIKR FUNCTION==
+
 
-
<StructureSection load='2wvd' size='340' side='right' caption='[[2wvd]], [[Resolution|resolution]] 2.65&Aring;' scene=''>
+
==Structural and mechanistic insights into Helicobacter pylori NikR function==
 +
<StructureSection load='2wvd' size='340' side='right'caption='[[2wvd]], [[Resolution|resolution]] 2.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2wvd]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WVD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WVD FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2wvd]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_26695 Helicobacter pylori 26695]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WVD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WVD FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.65&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2caj|2caj]], [[2ca9|2ca9]], [[2cad|2cad]], [[2wvb|2wvb]], [[2wve|2wve]], [[2wvf|2wvf]], [[2wvc|2wvc]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wvd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wvd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2wvd RCSB], [http://www.ebi.ac.uk/pdbsum/2wvd PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wvd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wvd OCA], [https://pdbe.org/2wvd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wvd RCSB], [https://www.ebi.ac.uk/pdbsum/2wvd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wvd ProSAT]</span></td></tr>
-
<table>
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/NIKR_HELPY NIKR_HELPY] Transcriptional regulator (Potential).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wv/2wvd_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wv/2wvd_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2wvd ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 25: Line 28:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 2wvd" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Helicobacter pylori]]
+
[[Category: Helicobacter pylori 26695]]
-
[[Category: Bahlawane, C.]]
+
[[Category: Large Structures]]
-
[[Category: Delay, C.]]
+
[[Category: Bahlawane C]]
-
[[Category: Dian, C.]]
+
[[Category: Delay C]]
-
[[Category: Fauquant, C.]]
+
[[Category: Dian C]]
-
[[Category: Michaud-Soret, I.]]
+
[[Category: Fauquant C]]
-
[[Category: Muller, C.]]
+
[[Category: Michaud-Soret I]]
-
[[Category: Reuse, H De.]]
+
[[Category: Muller C]]
-
[[Category: Round, A.]]
+
[[Category: Round A]]
-
[[Category: Schauer, K.]]
+
[[Category: Schauer K]]
-
[[Category: Terradot, L.]]
+
[[Category: Terradot L]]
-
[[Category: Metal-binding]]
+
[[Category: De Reuse H]]
-
[[Category: Metalloregulator]]
+
-
[[Category: Rhh dna-binding]]
+
-
[[Category: Transcription]]
+
-
[[Category: Transcription factor]]
+
-
[[Category: Transcription regulation]]
+

Current revision

Structural and mechanistic insights into Helicobacter pylori NikR function

PDB ID 2wvd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools