This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2vrb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2vrb" [edit=sysop:move=sysop])
Current revision (10:03, 9 May 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
==CRYSTAL STRUCTURE OF THE CITROBACTER SP. TRIPHENYLMETHANE REDUCTASE COMPLEXED WITH NADP(H)==
+
 
-
<StructureSection load='2vrb' size='340' side='right' caption='[[2vrb]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+
==Crystal structure of the Citrobacter sp. triphenylmethane reductase complexed with NADP(H)==
 +
<StructureSection load='2vrb' size='340' side='right'caption='[[2vrb]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2vrb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Citrobacter_sp._my-5 Citrobacter sp. my-5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VRB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VRB FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2vrb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Citrobacter_sp._MY-5 Citrobacter sp. MY-5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VRB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VRB FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene><br>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2jl1|2jl1]], [[2vrc|2vrc]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vrb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vrb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vrb RCSB], [http://www.ebi.ac.uk/pdbsum/2vrb PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vrb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vrb OCA], [https://pdbe.org/2vrb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vrb RCSB], [https://www.ebi.ac.uk/pdbsum/2vrb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vrb ProSAT]</span></td></tr>
-
<table>
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q2TNI4_9ENTR Q2TNI4_9ENTR]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vr/2vrb_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vr/2vrb_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vrb ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 25: Line 28:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 2vrb" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Citrobacter sp. my-5]]
+
[[Category: Citrobacter sp. MY-5]]
-
[[Category: Kim, M H.]]
+
[[Category: Large Structures]]
-
[[Category: Kim, Y.]]
+
[[Category: Kim MH]]
-
[[Category: Kwak, S N.]]
+
[[Category: Kim Y]]
-
[[Category: Lee, J S.]]
+
[[Category: Kwak SN]]
-
[[Category: Oh, T K.]]
+
[[Category: Lee JS]]
-
[[Category: Park, H J.]]
+
[[Category: Oh TK]]
-
[[Category: Oxidoreductase]]
+
[[Category: Park HJ]]
-
[[Category: Reductase]]
+
-
[[Category: Sdr family]]
+
-
[[Category: Triphenylmethane reduction]]
+

Current revision

Crystal structure of the Citrobacter sp. triphenylmethane reductase complexed with NADP(H)

PDB ID 2vrb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2vrb"
Personal tools