This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2w9u

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:05, 14 June 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
==SOLUTION STRUCTURE OF JERDOSTATIN MUTANT R24K FROM TRIMERESURUS JERDONII==
+
 
-
<StructureSection load='2w9u' size='340' side='right' caption='[[2w9u]], [[NMR_Ensembles_of_Models | 42 NMR models]]' scene=''>
+
==Solution structure of jerdostatin mutant R24K from Trimeresurus jerdonii==
 +
<StructureSection load='2w9u' size='340' side='right'caption='[[2w9u]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2w9u]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Protobothrops_jerdonii Protobothrops jerdonii]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W9U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2W9U FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2w9u]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Protobothrops_jerdonii Protobothrops jerdonii]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W9U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2W9U FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2w9o|2w9o]], [[2w9v|2w9v]], [[2w9w|2w9w]]</td></tr>
+
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2w9u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w9u OCA], [https://pdbe.org/2w9u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2w9u RCSB], [https://www.ebi.ac.uk/pdbsum/2w9u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2w9u ProSAT]</span></td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2w9u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w9u OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2w9u RCSB], [http://www.ebi.ac.uk/pdbsum/2w9u PDBsum]</span></td></tr>
+
</table>
-
<table>
+
== Function ==
 +
[https://www.uniprot.org/uniprot/DIS_PROJR DIS_PROJR] Recombinant protein inhibits the adhesion of alpha-1/beta-1-K562 (ITGA1/ITGB1) cells to collagen IV with an IC(50) of 80 nM.<ref>PMID:16215260</ref> <ref>PMID:21656569</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w9/2w9u_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w9/2w9u_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2w9u ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 24: Line 26:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 2w9u" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
Line 31: Line 34:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Protobothrops jerdonii]]
[[Category: Protobothrops jerdonii]]
-
[[Category: Calvete, J J.]]
+
[[Category: Calvete JJ]]
-
[[Category: Carbajo, R J.]]
+
[[Category: Carbajo RJ]]
-
[[Category: Mosulen, S.]]
+
[[Category: Mosulen S]]
-
[[Category: Pineda-Lucena, A.]]
+
[[Category: Pineda-Lucena A]]
-
[[Category: Sanz, L.]]
+
[[Category: Sanz L]]
-
[[Category: Blood coagulation]]
+
-
[[Category: Cell adhesion]]
+
-
[[Category: Toxin]]
+
-
[[Category: Venom]]
+

Current revision

Solution structure of jerdostatin mutant R24K from Trimeresurus jerdonii

PDB ID 2w9u

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools