3bqy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:43, 6 November 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of a possible TetR family transcriptional regulator from Streptomyces coelicolor A3(2).==
==Crystal structure of a possible TetR family transcriptional regulator from Streptomyces coelicolor A3(2).==
-
<StructureSection load='3bqy' size='340' side='right' caption='[[3bqy]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
+
<StructureSection load='3bqy' size='340' side='right'caption='[[3bqy]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3bqy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_coelicolor_a3(2) Streptomyces coelicolor a3(2)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BQY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BQY FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3bqy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_coelicolor_A3(2) Streptomyces coelicolor A3(2)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BQY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BQY FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene><br>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SCO0250, SCJ9A.29 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=100226 Streptomyces coelicolor A3(2)])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bqy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bqy OCA], [https://pdbe.org/3bqy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bqy RCSB], [https://www.ebi.ac.uk/pdbsum/3bqy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bqy ProSAT], [https://www.topsan.org/Proteins/MCSG/3bqy TOPSAN]</span></td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bqy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bqy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bqy RCSB], [http://www.ebi.ac.uk/pdbsum/3bqy PDBsum], [http://www.topsan.org/Proteins/MCSG/3bqy TOPSAN]</span></td></tr>
+
</table>
-
<table>
+
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9S1P1_STRCO Q9S1P1_STRCO]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bq/3bqy_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bq/3bqy_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bqy ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Cuff, M E.]]
+
[[Category: Large Structures]]
-
[[Category: Edwards, A M.]]
+
[[Category: Cuff ME]]
-
[[Category: Joachimiak, A.]]
+
[[Category: Edwards AM]]
-
[[Category: Kagan, O.]]
+
[[Category: Joachimiak A]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Kagan O]]
-
[[Category: Savchenko, A.]]
+
[[Category: Savchenko A]]
-
[[Category: Skarina, T.]]
+
[[Category: Skarina T]]
-
[[Category: Dna-binding]]
+
-
[[Category: Mcsg]]
+
-
[[Category: Midwest center for structural genomic]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Streptomyces coelicolor]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Tetr]]
+
-
[[Category: Transcription regulation]]
+
-
[[Category: Transcription regulator]]
+
-
[[Category: Transcriptional regulator]]
+

Current revision

Crystal structure of a possible TetR family transcriptional regulator from Streptomyces coelicolor A3(2).

PDB ID 3bqy

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools