This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3bbl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:30, 5 January 2022) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of a regulatory protein of LacI family from Chloroflexus aggregans==
==Crystal structure of a regulatory protein of LacI family from Chloroflexus aggregans==
-
<StructureSection load='3bbl' size='340' side='right' caption='[[3bbl]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
+
<StructureSection load='3bbl' size='340' side='right'caption='[[3bbl]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3bbl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chloroflexus_aggregans_dsm_9485 Chloroflexus aggregans dsm 9485]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BBL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BBL FirstGlance]. <br>
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BBL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BBL FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene><br>
+
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bbl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bbl OCA], [https://pdbe.org/3bbl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bbl RCSB], [https://www.ebi.ac.uk/pdbsum/3bbl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bbl ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3bbl TOPSAN]</span></td></tr>
-
<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
</table>
-
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CaggDRAFT_0381 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=326427 Chloroflexus aggregans DSM 9485])</td></tr>
+
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bbl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bbl OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bbl RCSB], [http://www.ebi.ac.uk/pdbsum/3bbl PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3bbl TOPSAN]</span></td></tr>
+
-
<table>
+
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bb/3bbl_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bb/3bbl_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bbl ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Chloroflexus aggregans dsm 9485]]
+
[[Category: Large Structures]]
-
[[Category: Burley, S K.]]
+
[[Category: Burley SK]]
-
[[Category: Kumaran, D.]]
+
[[Category: Kumaran D]]
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
[[Category: Swaminathan S]]
-
[[Category: Swaminathan, S.]]
+
-
[[Category: Dna-binding]]
+
-
[[Category: Laci family]]
+
-
[[Category: New york sgx research center for structural genomic]]
+
-
[[Category: Nysgxrc]]
+
-
[[Category: Periplasmic binding protein]]
+
-
[[Category: Protein structure initiative ii]]
+
-
[[Category: Psi-ii]]
+
-
[[Category: Regulatory protein]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Transcription regulation]]
+
-
[[Category: Transcriptional regulator]]
+

Current revision

Crystal structure of a regulatory protein of LacI family from Chloroflexus aggregans

PDB ID 3bbl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools