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1oxf
From Proteopedia
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==Expansion of the Genetic Code Enables Design of a Novel "Gold" Class of Green Fluorescent Proteins== | ==Expansion of the Genetic Code Enables Design of a Novel "Gold" Class of Green Fluorescent Proteins== | ||
| - | <StructureSection load='1oxf' size='340' side='right' caption='[[1oxf]], [[Resolution|resolution]] 1.69Å' scene=''> | + | <StructureSection load='1oxf' size='340' side='right'caption='[[1oxf]], [[Resolution|resolution]] 1.69Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[1oxf]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[1oxf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cfp_marker_plasmid_pWM1009 Cfp marker plasmid pWM1009]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OXF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OXF FirstGlance]. <br> |
| - | </td></tr><tr><td class="sblockLbl"><b>[[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.69Å</td></tr> |
| - | <tr | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4IN:4-AMINO-L-TRYPTOPHAN'>4IN</scene>, <scene name='pdbligand=5ZA:(5Z)-2-[(1S,2R)-1-AMINO-2-HYDROXYPROPYL]-5-[(4-AMINO-1H-INDOL-3-YL)METHYLENE]-3-(2-HYDROXYETHYL)-3,5-DIHYDRO-4H-IMIDAZOL-4-ONE'>5ZA</scene></td></tr> |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1oxf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oxf OCA], [https://pdbe.org/1oxf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1oxf RCSB], [https://www.ebi.ac.uk/pdbsum/1oxf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1oxf ProSAT]</span></td></tr> | |
| - | <table> | + | </table> |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ox/1oxf_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ox/1oxf_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1oxf ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 1oxf" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
| - | *[[Green Fluorescent Protein|Green Fluorescent Protein]] | + | *[[Green Fluorescent Protein 3D structures|Green Fluorescent Protein 3D structures]] |
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Cfp marker plasmid | + | [[Category: Cfp marker plasmid pWM1009]] |
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Azim MK]] |
| - | [[Category: Budisa | + | [[Category: Budisa N]] |
| - | [[Category: Holak | + | [[Category: Holak TA]] |
| - | [[Category: Huber | + | [[Category: Huber R]] |
| - | [[Category: Jung | + | [[Category: Hyun Bae J]] |
| - | [[Category: Kim | + | [[Category: Jung G]] |
| - | [[Category: Moroder | + | [[Category: Kim JS]] |
| - | [[Category: Rubini | + | [[Category: Moroder L]] |
| - | [[Category: Seifert | + | [[Category: Rubini M]] |
| - | [[Category: Wiegand | + | [[Category: Seifert MH]] |
| - | [[Category: Zumbusch | + | [[Category: Wiegand G]] |
| - | + | [[Category: Zumbusch A]] | |
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Current revision
Expansion of the Genetic Code Enables Design of a Novel "Gold" Class of Green Fluorescent Proteins
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Categories: Cfp marker plasmid pWM1009 | Large Structures | Azim MK | Budisa N | Holak TA | Huber R | Hyun Bae J | Jung G | Kim JS | Moroder L | Rubini M | Seifert MH | Wiegand G | Zumbusch A
